Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01188 GAAAAAGACAAGAAAAGAAAGATGAAGCAGCAGCGCGTAAGTAGCGAAGGGAATGGGAATCAGAACAACTCAAAAGCGCACGTGAGAGTGAACCGCCCGTTGAGGTTCGTGGAGGGCAGCGGGGTGGACATGTGCAGTGATTCAAAAAGTAATCTTTGTTCCCCAAGCCTAGTCATGGAGAAGCAGAATCTAGATGGTGTGTACAACTTGTCAGCTTTGCTCGAATTGTCTGCTTCCGATGATTTTGAAGCTTTCAGAAGACAAGTGGAAGAAAAGGGCTTAGATGTGAACGAGGGAGGCTTTTGGTATGGTAGAAGAATTGGTTCGAAGAAGATGGGATCTGAAACGAGGACCCCTCTCATGATTGCCTCTTTGTTTGGAAGCACTAAGGTGCTGAAATATATTCTTGAGGCCGCAAGTGTTGATGTGAACAGGGCCTGCGGTGCTGATGGGGCCACTGCTCTCCACTGTGCCGTTGCTGGTGGCTCTGAATCCTCACTTGAGATTGTGAAGCTCTTGCTGGATGCCGGGGCTGATCCTGAGTGCCTTGATGCCACTGGAAACAAGCCCGTTAATCTTATGGCTCCTGCCTTTGATTCCTCTTCCAAATCTCGAAGGAAGGCTATGGAGTTGTTTCTGAGGGGTGGGGAAAGAGATGAACTCATGAGCCAGGAGATGTTTTCTGTTCCAGAGAAAAAAGAGAAAGATGGAACTGATAAGAAGGAGTATCCTGTTGACATATCGTTGCCTGACATAAACAACGGTGTGTATGGAACAGATGAGTTTAGGATGTACAGCTTCAAGGTGAAGCCTTGCTCGAGGGCTTACTCCCATGACTGGACTGAGTGTCCATTTGTTCATCCAGGGGAGAATGCAAGGAGGAGAGACCCACGGAAATACCCTTACAGCTGTGTTCCTTGCCCTGAGTTTCGCAAAGGGACCTGCCAGAAGGGTGATTCCTGTGAGTATGCTCATGGTGTTTTCGAGTCCTGGCTTCATCCTGCCCAGTACAGAACAAGGCTTTGCAAGGATGAGACTGGCTGCACCAGAAAAGTCTGCTTCTTTGCTCACAAACCTGAAGAGCTACGCCCTGTGTATGCTTCCACTGGGTCAGCTATGCCTTCACCAAAATCTTATTCAGCTAGTGGACTTGACATGACATCAATGAGTCCATTGGCTCTTAGTTCCACATCTCTGCCTATGCCCACTGTTTCAACCCCGCCCTTGTCTCCCCTGGCCGCAGCTTCATCTCCCAAGAGTGGAAGTTTGTGGCAGAACAAAATTAACCTTACTCCACCATCTTTGCAGCTCCCGGGTAGCCGACTGAAGGCTGCTTTGAGTGCCAGGGATCTGGAAATGGAGATGGAACTGCTTGGTCTAGAAAGCCCTGCTCGCCAGCAGCAACAACAATTGATAGAAGAGATTGCCAGGATCTCTTCCCCATCTTTCCGGAGCAAGGAATTCAATAGGATTGGTGATTTGAATCCAACTAACCTTGATGACCTGTTAGCATCTGCTGACCCTTCTGTCTTATCCCAACTACATGGTCTTTCTGTGCAACCTTCAACACCCACACAAAGTGGGCTTCAGATGCGCCAAAACATGAATCACCTTCGAGCGAGTTATCCATCCAATCTCCCATCCTCTCCTGTGAGAAAGCCCTCAGCTTTTGGATTTGACTCATCAGCTGCAGTGGCAGCTGCAGTGATGAATTCCAGGTCTGCTGCCTTCGCAAAGCGAAGCCAAAGTTTTATTGATCGTGGAGCTGCAACCCACCATCTTGGGCTGTCTTCAGTCTCCAACCCTTCCTGCAGGGTGTCCTCTACCCTTTCAGATTGGAGTTCCCCAACTGGGAAACTGGATTGGGGTGTAAATGGTGATGAACTGAACAAACTGAGGAAATCTGCTTCCTTTGGGTTCAGAAATAATGGGGTAACTGCATCCCCCATAGCACAGCCAGAATTTGGTGCTGAGCCGGATGTCTCTTGGGTTCATTCATTGGTTAAAGATGTTCCCTCTGAGAGATCTGAAATATTTGGTGCTGAGAAGCAACAATATGATCTCAGTAAAGAGATGCTTTCACCATGGGTGGAGCAGATGTATATAGAGCAGGAGCAGCTGTTAGGGATAGGACGAGATAATATGTTGCAAAGAACAAAAGTTCAGGTTAATCCAGAGATTTGGACGGAGTTCCAACTTCTAGACCAGGGAAGACTTGGAGAAACGTTGAAAGAAGGGTGCTGA 2244 0.4813 EKDKKRKMKQQRVSSEGNGNQNNSKAHVRVNRPLRFVEGSGVDMCSDSKSNLCSPSLVMEKQNLDGVYNLSALLELSASDDFEAFRRQVEEKGLDVNEGGFWYGRRIGSKKMGSETRTPLMIASLFGSTKVLKYILEAASVDVNRACGADGATALHCAVAGGSESSLEIVKLLLDAGADPECLDATGNKPVNLMAPAFDSSSKSRRKAMELFLRGGERDELMSQEMFSVPEKKEKDGTDKKEYPVDISLPDINNGVYGTDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGTCQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCTRKVCFFAHKPEELRPVYASTGSAMPSPKSYSASGLDMTSMSPLALSSTSLPMPTVSTPPLSPLAAASSPKSGSLWQNKINLTPPSLQLPGSRLKAALSARDLEMEMELLGLESPARQQQQQLIEEIARISSPSFRSKEFNRIGDLNPTNLDDLLASADPSVLSQLHGLSVQPSTPTQSGLQMRQNMNHLRASYPSNLPSSPVRKPSAFGFDSSAAVAAAVMNSRSAAFAKRSQSFIDRGAATHHLGLSSVSNPSCRVSSTLSDWSSPTGKLDWGVNGDELNKLRKSASFGFRNNGVTASPIAQPEFGAEPDVSWVHSLVKDVPSERSEIFGAEKQQYDLSKEMLSPWVEQMYIEQEQLLGIGRDNMLQRTKVQVNPEIWTEFQLLDQGRLGETLKEGC 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01188 747 Gene3D - 302 364 - -
Pste8g01188 747 PANTHER UNKEMPT FAMILY MEMBER 75 671 IPR045234 -
Pste8g01188 747 SMART c3hfinal6 301 327 IPR000571 GO:0046872
Pste8g01188 747 SMART c3hfinal6 336 359 IPR000571 GO:0046872
Pste8g01188 747 SUPERFAMILY Ankyrin repeat 66 195 IPR036770 -
Pste8g01188 747 ProSiteProfiles Zinc finger C3H1-type profile. 301 328 IPR000571 GO:0046872
Pste8g01188 747 Pfam Ankyrin repeats (3 copies) 108 182 IPR002110 GO:0005515
Pste8g01188 747 ProSiteProfiles Ankyrin repeat region circular profile. 150 179 - -
Pste8g01188 747 Gene3D - 155 213 IPR036770 -
Pste8g01188 747 SMART ANK_2a 150 182 IPR002110 GO:0005515
Pste8g01188 747 SMART ANK_2a 115 145 IPR002110 GO:0005515
Pste8g01188 747 MobiDBLite consensus disorder prediction 13 28 - -
Pste8g01188 747 ProSiteProfiles Ankyrin repeat profile. 150 185 IPR002110 GO:0005515
Pste8g01188 747 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 306 326 IPR000571 GO:0046872
Pste8g01188 747 MobiDBLite consensus disorder prediction 1 28 - -
Pste8g01188 747 FunFam Zinc finger CCCH domain-containing protein 66 259 327 - -
Pste8g01188 747 Gene3D - 67 154 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01188 Pste-Chr8 6289514 6292552 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01188 68 704 C2H2 Transcription Factor Family AT5G12850 40.736 5.54e-147 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pste8g01188 Ank_2 1.1e-09 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01188 8 6289514 6292552 Pste8g01188 8 6289514 6292552 ECH