Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01166 TTTTGTTGAAGTGACAGGCGGATACAGCCAAAAACGATTTTCATCTGACCCCATTAAAGGTTATTGCATAATGCATATCACACCAATCCCCAAAAAGATAAGAAGAAAATCACCCATTAAGCAAACAGTGTCCATGAAATGGGAAATAAAAAGCTCAGAAAGCCAGGCACAAGCATTAGAATGGTTCCTAACTGTGCATATGGAAAGTTACTACTATTCTGGGTGGCCTCTTGCCACCAACGTGGCTCAATGTAACTCTGCACCAAACAGTGATCAATTATCTCCTTTTTCAGTTCCAACTACACATTCACTCCCTCTTGGTTCTGACCCTGTTGCCTCTCCTCAATTTGGTGAGTTCCCTTCGTGGCCTGCACCCATTTCAGAAGATAGAGCTGCAAGTGCTTCCAAGAGCCACAGCCAAGCAGAGAAAAGGCGCAGGGACAGGATCAATACACAGCTTGCTACTCTCAGAAAGTTCATTCCAAAGTCTGATAAGATGGACAAAGCAGCATTACTAGGGAGTGTGGTAGACCATGTGAAAGATCTAAAGCGAAAAGCAATGGATGTCAGCAAAGCCATCACTGTTCCAACGGAAACTGATGAAGTAACAATTGACTACCACCAAGCTCAAGACAATAGCTACACTATATTCAAGGAAAACATAGTAATCAAAGCTTCTGTTTGCTGCGATGATCGACCAGAACTGTTCCCTGAACTCGTCCAAGTCCTCAAAGGGTTGAGACTCACAGCAGTTAAGGCTGACATAGCCAGTGTGGGTGGCAGAATCAAAAGCATATTGGTTCTTTGCTCTAAGGATAGTGAAGAGAATAGTGTTAACCTTAGCACTGTCAAACAATCCCTTAAATCAGCTGTGAACAAAATTGCTTCGTTATCCGGGGCAACAAACTGTCCCACTAGAAGTAAGAGGCAGAGGTTCTTCTTGCCTTCTCATTACGTACAATAATTCATTGCAATTTTCTTTTTTTAATTTTTTTCATTCTTAGGGGGTCGTGTCAGTAGGTGAAA 1026 0.424 MHITPIPKKIRRKSPIKQTVSMKWEIKSSESQAQALEWFLTVHMESYYYSGWPLATNVAQCNSAPNSDQLSPFSVPTTHSLPLGSDPVASPQFGEFPSWPAPISEDRAASASKSHSQAEKRRRDRINTQLATLRKFIPKSDKMDKAALLGSVVDHVKDLKRKAMDVSKAITVPTETDEVTIDYHQAQDNSYTIFKENIVIKASVCCDDRPELFPELVQVLKGLRLTAVKADIASVGGRIKSILVLCSKDSEENSVNLSTVKQSLKSAVNKIASLSGATNCPTRSKRQRFFLPSHYVQ 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01166 297 Gene3D - 104 168 IPR036638 GO:0046983
Pste8g01166 297 Pfam Helix-loop-helix DNA-binding domain 113 159 IPR011598 GO:0046983
Pste8g01166 297 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 110 159 IPR011598 GO:0046983
Pste8g01166 297 SMART finulus 116 165 IPR011598 GO:0046983
Pste8g01166 297 CDD bHLH_AtAIG1_like 105 182 - -
Pste8g01166 297 CDD ACT_UUR-ACR-like 203 238 - -
Pste8g01166 297 PANTHER TRANSCRIPTION FACTOR BHLH30 102 294 IPR045847 GO:0003700|GO:0006355
Pste8g01166 297 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 111 162 IPR036638 GO:0046983
Pste8g01166 297 MobiDBLite consensus disorder prediction 104 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01166 Pste-Chr8 6140241 6141906 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01166 94 295 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G40200 46.698 6.07e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste8g01166 HLH 1.2e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01166 8 6140241 6141906 Pste8g01166 8 6140241 6141906 ECH
Pste7g02214 7 20497967 20499363 Pste8g01166 8 6140241 6141906 PCT