Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01164 ATGACCGGCGACGATCGAGTGAAGGGGTCGTGGAGTCCTAAGGAGGATGCGACGTTGCTGAAATTAGTGAATGAGCACGGGGCGCGCAACTGGTCCATCATAAGCAGCGGCATTCCCGGCCGCTCCGGCAAGTCCTGTCGTCTCCGTTGGTGTAATCAGCTGAGTCCCCACGTGCAGCACCGTCCGTTCACGCCGGCGGAGGACAAGATCATCGTAAAGGCGCACGCCATTTACGGAAACAAGTGGGCCACAATCTCCCGCCTCCTCCCTGGGCGCACCGACAACGCCATAAAGAACCACTGGAACTCCACGCTCCGTCGCCGTCGCGCCGCCGAGCACTCCTCCTCCTCCTCCTCCTCCTCCTCCTCGGGATCTCCGCCTCCGCCCAAACGTCCCTCTTCCTTGTTCGACACCCTTCAACCTTTCAAGAAGCAAAAGGAAAACGCGGAAGAGCGAGTGCCGAGTCCCGTCACCACCTCCTTGACTCTCCTCCCTCCTGGAGAAAAGTCAGAGGAAGAAGAAGAAGAGGACAAGAAAGAGTTTGAAGCCAATGTTATTAACAATGTTTCGGATCAGAATTACTTTATGCAGATCGTGCAGCGCATGATTGCACAAGAGGTTAAGAATTATGTGGATAGCTTGCGCCATCCAGACACCCACCCCCTTTCTCTCAGCTCTCGATTCGATCTTCATTCCATGCTTCCAAAATAA 711 0.5513 MTGDDRVKGSWSPKEDATLLKLVNEHGARNWSIISSGIPGRSGKSCRLRWCNQLSPHVQHRPFTPAEDKIIVKAHAIYGNKWATISRLLPGRTDNAIKNHWNSTLRRRRAAEHSSSSSSSSSSGSPPPPKRPSSLFDTLQPFKKQKENAEERVPSPVTTSLTLLPPGEKSEEEEEEDKKEFEANVINNVSDQNYFMQIVQRMIAQEVKNYVDSLRHPDTHPLSLSSRFDLHSMLPK 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01164 236 PANTHER MYB PROTEIN-RELATED 8 130 - -
Pste8g01164 236 SUPERFAMILY Homeodomain-like 6 101 IPR009057 -
Pste8g01164 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 109 IPR017930 -
Pste8g01164 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 54 IPR017930 -
Pste8g01164 236 ProSiteProfiles Myb-like domain profile. 55 105 IPR001005 -
Pste8g01164 236 SMART sant 59 107 IPR001005 -
Pste8g01164 236 SMART sant 7 56 IPR001005 -
Pste8g01164 236 MobiDBLite consensus disorder prediction 99 180 - -
Pste8g01164 236 CDD SANT 10 52 IPR001005 -
Pste8g01164 236 Gene3D - 7 59 - -
Pste8g01164 236 ProSiteProfiles Myb-like domain profile. 3 54 IPR001005 -
Pste8g01164 236 FunFam Transcription factor MYB44 62 108 - -
Pste8g01164 236 CDD SANT 62 105 IPR001005 -
Pste8g01164 236 Gene3D - 61 126 - -
Pste8g01164 236 FunFam MYB transcription factor 8 59 - -
Pste8g01164 236 Pfam Myb-like DNA-binding domain 8 54 IPR001005 -
Pste8g01164 236 Pfam Myb-like DNA-binding domain 62 104 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01164 Pste-Chr8 6126350 6127060 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01164 5 215 MYB Transcription Factor Family AT5G67300 38.849 1.55e-54 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste8g01164 Myb_DNA-binding 7.8e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01164 8 6126350 6127060 Pste8g01164 8 6126350 6127060 ECH