Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01161 ATGGCCTCTCACCAACCTCAACCCCAAGAAATCAAATCCACCGCCACCACCGCCACAGAAACCATTCCCTGCCAAACATCTAACAGCACTGCCAACAGCACCAGCACCAGCACCAGCAACAGTAGTGACAACAAAGCTACTCGTAAATGCAAAGGTAAAGGTGGCCCCGACAACAACAAATTTAGGTACCGCGGCGTCAGACAACGAAGCTGGGGAAAATGGGTTGCCGAGATCCGCGAGCCACGTAAGAGAACTCGCAAGTGGCTTGGAACCTTTGCCACCGCCGAAGACGCCGCCAGAGCCTACGACCGCGCCGCCATCATCCTCTATGGTTCTAGGGCACAGCTTAATCTCCAACCCTCCGCTTCCACTTCTAATTCTTCCTCTTCTCGTAACTCTTCCTCTTCGACTCAAACCCTTAGACCCTTGCTTCCTCGCCCTTCAGGTTTCACTTTCAATTTTCCCTACAACGCCGCCCCCGCCATGCCTTACCCTTGCACATCCGCTTATCTCAGTAGTTACAATTGTACCCCACCAGTATTGTGCCCTATTGATAATAATAGTAACAATAATATAGTGCAAGTTCATCAACATCACCACTGTTGTCCCGAGGAAGTGGTTCAAGTGCAATTACCACATACTCCATCAACATCATATCATCAACATTCAGAATCTGATGTGAGTTTAGGTGGAAATAATACTTCTATTCGATCAACCTCGTACCCAAGGCGTCATCATGATGATAACAACAATAATAATCATGTGCATGTGCAACATGGTGTTTTGTCAAATCAATTGCAACATCAGAATCAAGATGTGGAGGGAGTGAATTCTATTGTGGGTTCGGTTGGGTCTTCTTCTCAGGTAAATATGGATGCATCATTGGATCCGGATCTGTCATTGGTGGAGACAGTGGCGCTTGAATCTTCCTCCTTGTGGTCTTTGGCGACTGAGGATGATTACTCTGGTAGTTTGTGGGATTATAATGATCCTTTCTTCTTTGATCTTTAG 1011 0.4688 MASHQPQPQEIKSTATTATETIPCQTSNSTANSTSTSTSNSSDNKATRKCKGKGGPDNNKFRYRGVRQRSWGKWVAEIREPRKRTRKWLGTFATAEDAARAYDRAAIILYGSRAQLNLQPSASTSNSSSSRNSSSSTQTLRPLLPRPSGFTFNFPYNAAPAMPYPCTSAYLSSYNCTPPVLCPIDNNSNNNIVQVHQHHHCCPEEVVQVQLPHTPSTSYHQHSESDVSLGGNNTSIRSTSYPRRHHDDNNNNNHVHVQHGVLSNQLQHQNQDVEGVNSIVGSVGSSSQVNMDASLDPDLSLVETVALESSSLWSLATEDDYSGSLWDYNDPFFFDL 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01161 336 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Pste8g01161 336 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
Pste8g01161 336 SUPERFAMILY DNA-binding domain 62 120 IPR016177 GO:0003677
Pste8g01161 336 MobiDBLite consensus disorder prediction 1 64 - -
Pste8g01161 336 ProSiteProfiles AP2/ERF domain profile. 62 119 IPR001471 GO:0003700|GO:0006355
Pste8g01161 336 MobiDBLite consensus disorder prediction 119 144 - -
Pste8g01161 336 SMART rav1_2 62 125 IPR001471 GO:0003700|GO:0006355
Pste8g01161 336 MobiDBLite consensus disorder prediction 46 64 - -
Pste8g01161 336 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 12 292 - -
Pste8g01161 336 MobiDBLite consensus disorder prediction 1 45 - -
Pste8g01161 336 Pfam AP2 domain 62 110 IPR001471 GO:0003700|GO:0006355
Pste8g01161 336 Gene3D AP2/ERF domain 61 119 IPR036955 GO:0003700|GO:0006355
Pste8g01161 336 CDD AP2 62 119 IPR001471 GO:0003700|GO:0006355
Pste8g01161 336 FunFam Ethylene-responsive transcription factor 2 62 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01161 Pste-Chr8 6083877 6084887 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01161 46 336 AP2-EREBP Transcription Factor Family AT2G40220 43.344 5.54e-48 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pste8g01161 AP2 1.2e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01161 8 6083877 6084887 Pste8g01161 8 6083877 6084887 ECH