Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01153 ATGAAGGGTTATGAGCCACGTTCAAGTTCTTCTTGTGCAGCCTGCAAGTTCTTGAAGAGAAGATGCATACCCAATTGTATATTTGCACCTTACTTTAGGTCTGACGAGTGCAAGAAATTCGCAAAGGTGCACAAGGTGTTTGGGGCCAGCAATGTGAGCAAGATCCTGATCGAAGTTCCCGAGGAGCAGAGAGAGGACACGGTTAATTCGCTCGCTTATGAGGCAGAAGCAAGGCTGAGGGACCCCGTTTATGGATGCATTGGTGCCATAGCTCTGTTGCAAAGGAAGATGGTCGAGCTTCAACATGACCTCGCCGTTGCTAAGGACCGTCTTGCTCGCTATGCTGCTGCTGCTACCACCCCTTCCGCCACTGATACCTTCAATGCCCATGTTAGTTTGCCACCCTTCCCTGAATTTTTCACTTGTGCTGATTTCAATGACAACTTCTCCCACACCTCTTCTTCTCAATCTTTTACCAGACATGAAACGGTCGATGATTTCATTCAAGTCCCTTATATATTTTGA 525 0.4724 MKGYEPRSSSSCAACKFLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQHDLAVAKDRLARYAAAATTPSATDTFNAHVSLPPFPEFFTCADFNDNFSHTSSSQSFTRHETVDDFIQVPYIF 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01153 174 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Pste8g01153 174 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Pste8g01153 174 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 130 - -
Pste8g01153 174 Coils Coil 90 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01153 Pste-Chr8 6043833 6044357 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01153 1 116 AS2 family AT3G11090 77.586 2.17e-64 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pste8g01153 LOB 4.9e-38 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01153 8 6043833 6044357 Pste8g01153 8 6043833 6044357 ECH