Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01151 ATGAATAATTTTCTATCGGCAGTGATGGTCTCCCAAGGCTTGTTACCTTCCGGGTCTTTAATTGATTCATTGATTCACGTATCCAAAGAAGTTGGCTTAATGGAGAAGGTTCCATTAGTACACACGAGGAGCGTTTCATCCATGATAAGGAGGATCAAGTTTCTTTCTTCGTTGTTTGAAGAGATTCAAGAAACTGATACTCCACTTCCTCCTTCTTCAATCCTGTGTCTGACAGAACTCTTCTCTGTCATTAGAAGAGTGAAGGTTTTGATCCAAGACTGCAAGGAGGGAAGTTCTCTCTGGGCTCTCATACAGTTAGAGTTCATTTCTAACCAATTTTATGTGCTTGTAAAGGAGATGGGAAGGGCCCTTGATATCCTTCCTTTAAGTTTACTGAATGTAACATCAGATATACGTGAACAAGTGGAGCTTCTTCACAAGCAAGCAAAGAAGGCTGAGTTACTCATTGATCCTAGAGAGCTTCAACGAAGAGAACAGCTTATACAATTAATGGCCAACAACAGTTTACAAAAAAAGAAGAACAAGGGGTTCATTGACTTTGGCAAAGTGGAAGAGATATTAAGCAGCATTGGTTTGAGAACCCCATTAGATTATGATGGAGAAATATCCAAGTTAGAGGCCGAAGCTCAGAACCAAGCTGGCACAGGAGGACTAATCGTTGTCTCCAATATAAATAATCTCATATCTCTGGTATCTTATTCCAAATCCATGATATTCAGAGATGGAGAGAATGATAGGAATGAAGAAGATTGTAAGCCACTATCTGCATTTTTGTATAACAAAGTCCATGATAGTTCTTCATCGTCTCAATCCATCACGCTTAATGTTCCTGATGAATTTCGTTGCCCAATTTCACTTGACTTAATGAGGGACCCTGTGATTGTTTCATCGGGACACACTTATGATAGACCCTCAATTGCACAATGGATAAACTCTGGCCATCCCACTTGCCCCAAAAGTGGGCAAAGACTAATTCACACTGCTCTAATACCCAACTGTGCATTAAAGAGCCTTGTTCAGCAATGGTGCTATGACAACAATGTCCCAGTGAATGAGCCTACAACAGAAGGAAACAACAACAAAAAGTTGAAGGAGGATGCCATAGACCATATTTCTGCAAACAAAGCAGCTGCAGATGCTGTCAAAATGACAGCAGAATTTCTTGTTGGAAAATTGGCAACTGGTTCTGCTGATATCCAAAGGCAAGCTGCATACGAACTTCGGTTACTCGCGAAAACCGGCATGGTTAACAGAAGAGTCATAGCTGAGGTAGGGGCTATTCCCTTTCTTGTTACAGTTCTAGGATCACAAGATTCACGAATTCAAGAACATGCAGTGACAGCCTTATTCAACCTCTCGATATTCGACAACAACAAGATTTTGATCATGGCAGCAGGAGCAGTTGATAGCATAGTGGAAGTACTAGAATCAGGGAAGACAATGGAGGCAAGGGAGAATGCAGCAGCATCAATATATAGCTTGTCTATGGTAGATGAGTGCAAAGTGCAAATTGGAGGAAGACCGAGGGCAATACCTGCCTTAGTTGGACTCTTGAAAGAAGGCACTCCAATTGGGAAAAGAGATGCTGCAAGTGCACTGTTCAACCTTGGTGTTTACAATCCCAACAAGGAAAGTGTGGTGAAATCTGGAGCAGTTCCAGTGCTGGTAGAGTTGCTGGTGGATGTCAAGGCTGGCATAACAGATGATGCACTTGCTGTGCTTGCTTTGCTCCTTGGATGCTCTGAGGGGCTAGAAGAGATAAGGAATAGTAGAGCATTGGTGCCACTTCTTATTGATCTTTTGAGATTTGGGTCTGTGAAAGGGAAGGAAAATTCAATAACTCTTTTGCTAGGACTGTGTAAAGAAGAGGGGGAAGTGGTGGCAAGGAGGCTCTTAGCAAATCCAAGGAGCATTCCTTCTCTTCAAAGCTTGGCTGCAGATGGGTCTTTGAGAGCTAGAAGAAAGGCAGATGCACTGCTCAGATTCCTCAATAGGTGGTGTTCTCAACCTCATCATTCTGTTTGA 2046 0.4238 MNNFLSAVMVSQGLLPSGSLIDSLIHVSKEVGLMEKVPLVHTRSVSSMIRRIKFLSSLFEEIQETDTPLPPSSILCLTELFSVIRRVKVLIQDCKEGSSLWALIQLEFISNQFYVLVKEMGRALDILPLSLLNVTSDIREQVELLHKQAKKAELLIDPRELQRREQLIQLMANNSLQKKKNKGFIDFGKVEEILSSIGLRTPLDYDGEISKLEAEAQNQAGTGGLIVVSNINNLISLVSYSKSMIFRDGENDRNEEDCKPLSAFLYNKVHDSSSSSQSITLNVPDEFRCPISLDLMRDPVIVSSGHTYDRPSIAQWINSGHPTCPKSGQRLIHTALIPNCALKSLVQQWCYDNNVPVNEPTTEGNNNKKLKEDAIDHISANKAAADAVKMTAEFLVGKLATGSADIQRQAAYELRLLAKTGMVNRRVIAEVGAIPFLVTVLGSQDSRIQEHAVTALFNLSIFDNNKILIMAAGAVDSIVEVLESGKTMEARENAAASIYSLSMVDECKVQIGGRPRAIPALVGLLKEGTPIGKRDAASALFNLGVYNPNKESVVKSGAVPVLVELLVDVKAGITDDALAVLALLLGCSEGLEEIRNSRALVPLLIDLLRFGSVKGKENSITLLLGLCKEEGEVVARRLLANPRSIPSLQSLAADGSLRARRKADALLRFLNRWCSQPHHSV 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01151 681 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 432 474 IPR000225 GO:0005515
Pste8g01151 681 FunFam RING-type E3 ubiquitin transferase 355 509 - -
Pste8g01151 681 SUPERFAMILY ARM repeat 392 670 IPR016024 -
Pste8g01151 681 CDD RING-Ubox_PUB 284 336 IPR045210 -
Pste8g01151 681 PANTHER U BOX DOMAIN-CONTAINING 44 671 - -
Pste8g01151 681 Pfam U-box domain 283 353 IPR003613 GO:0004842|GO:0016567
Pste8g01151 681 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 516 558 IPR000225 GO:0005515
Pste8g01151 681 SMART Ubox_2 286 349 IPR003613 GO:0004842|GO:0016567
Pste8g01151 681 Gene3D - 515 673 IPR011989 -
Pste8g01151 681 ProSiteProfiles U-box domain profile. 282 356 IPR003613 GO:0004842|GO:0016567
Pste8g01151 681 Pfam Armadillo/beta-catenin-like repeat 547 582 IPR000225 GO:0005515
Pste8g01151 681 Pfam Armadillo/beta-catenin-like repeat 424 460 IPR000225 GO:0005515
Pste8g01151 681 Gene3D - 367 514 IPR011989 -
Pste8g01151 681 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 357 IPR013083 -
Pste8g01151 681 FunFam RING-type E3 ubiquitin transferase 282 356 - -
Pste8g01151 681 SMART arm_5 587 628 IPR000225 GO:0005515
Pste8g01151 681 SMART arm_5 546 586 IPR000225 GO:0005515
Pste8g01151 681 SMART arm_5 507 545 IPR000225 GO:0005515
Pste8g01151 681 SMART arm_5 380 419 IPR000225 GO:0005515
Pste8g01151 681 SMART arm_5 421 461 IPR000225 GO:0005515
Pste8g01151 681 SMART arm_5 462 503 IPR000225 GO:0005515
Pste8g01151 681 SUPERFAMILY RING/U-box 271 357 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01151 Pste-Chr8 6023687 6025732 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01151 18 676 U-box Gene Family AT3G46510 37.311 8.42e-126 386
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01151 8 6023687 6025732 Pste8g01151 8 6023687 6025732 ECH