Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01126 ATGGGTGGAAATTCCCCTTGTGCTTCATGCAAATTGCTGAGACGCCGGTGTACAAAAGATTGCACCTTTGCTCCTTATTTTCCTTCTGATGAACCCCAAAAGTTTGCTTTGGTTCACAAGGTTTTTGGTGCTAGCAATGTTAGCAAAATGTTGCAGGAACTTCCAGTTCATCTGAGAGCAGATGCAGTGAGTAGTCTAGTGTATGAGGCAAGTGCAAGAGTGAGGGACCCTGTGTATGGTTGTGTTGGAGCCATATCCTACTTGCAAAATCAAGTTTCCGAGCTTCAAATGCAGCTTGCAGTTGCTCAAGCAGAGATACTCTGCATCCAGATGGAACATGAGCCAGTGATGCCAGCCTCAGAAATTGATCAAGACCAAAAGTCTTACTTTCTCCAAAGTGACCTCTCTCAGTTCCTTGGTTTTGACACTTCTAACAATGTAATTAACTATTCCCCCGAGCAATTTTGTCCATGA 474 0.4388 MGGNSPCASCKLLRRRCTKDCTFAPYFPSDEPQKFALVHKVFGASNVSKMLQELPVHLRADAVSSLVYEASARVRDPVYGCVGAISYLQNQVSELQMQLAVAQAEILCIQMEHEPVMPASEIDQDQKSYFLQSDLSQFLGFDTSNNVINYSPEQFCP 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01126 157 Coils Coil 85 105 - -
Pste8g01126 157 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Pste8g01126 157 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Pste8g01126 157 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01126 Pste-Chr8 5890428 5891161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01126 3 131 AS2 family AT2G30130 78.947 2.44e-74 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pste8g01126 LOB 6.4e-42 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste7g02234 7 20696372 20697086 Pste8g01126 8 5890428 5891161 ECH
Pste8g01126 8 5890428 5891161 Pste8g01126 8 5890428 5891161 ECH
Pste7g02234 7 20696372 20697086 Pste8g01126 8 5890428 5891161 PCT