Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01118 ATATCAGATATGAAACAAAGGCTTGTTGGTGAAAGTTAAGTTTGAGACTATTACTACTGCAGAAGTTCACAACATCGACAAGTTGTTAGCTGTCACACAACCAATGACGAGCAGAAAAAGGCGTTTAAATCAACTCAAGCATCCATTCAGTTCTCAGCCCTTTGAAGCAGTTGCCTTTGGCTCATGGCAAGCTGTGGAGTTCATAAAGATTGAGGCAGGGACTATGTCCATGCATTTTGTAGATAATCATCATATGGCTATGGAGAAAGGACCCATAGCAGACATTCGGATAAGGTCAAGGAAAGCTACTTCATCTGATTGTTCCCGTTTTTTACGTCCTGGAATTGACGTATGTGTGCTAGCAGTTCCTCTACAATCTGATGATTCTGATGCAATTAGTATTGACCCTGTTTGGGCTGATGCTAAAATAAGTTCTGTACAAAGAAAACCTCATGACTCTGAGTGCTCCTGTCAGTTTTATGTCAACTTCTATGTTCAACAAGGTTCACTTGGTGCAGAGCTCAGAAGTCTTCGTAAGGAGATTAAAGTAGTTGGAATTAATCAAATATCGATCCTCCAAAAACTTGAAACTACTCCTTGTGAAGATCAGCATTACAGGTGGACATCATCCGAGGATTGTTCCATTATATCGCACACTAAATTGCTTTTGGGGAAAGTGTTATGTGATCTTTCATGGTTAGTCGTTACTTCTGTTATAAAGAAGGTTTCATTTTGCGTAAGATCCTTAGAAGACAAGCTAGTGTATCAAGTTTTGAGAAGGGATACTGTTAGCACTTCATTGAACAATGAGTCAGACATTGATGTTGTGAATTTCAAAACAGACAATGGCATGTTAGTACCCATTGTTTCTCAAGTAGCTGCCTCTAAAACAAAGAGGGTTGGTCATGTAGAGGAATCCCATGAAGATAATGTATCACCATCTTATAATGTCGAGGGCTTACGTCGTTCCAAGCGCCGGAATGTACAGCCTGAGCGATACCTTGGTTGTGATAATGTTTCTGAGATTGATGTTGGTTCTTTTAGAAACTTACCACCAGTTAAGATAGACACATGGAAAGATGATGATGATGTTGATCCTGAGCTGCACATGCCATTAGGTTGCCTGTTTGGTTTGCAGCAAAACTGTCTAGAAGGGAATTCTAATAATCATAGAAAGGTCAAGAAGGCAAATACCTGCCGGGAGCTTGTGGTGTATAATAGGAACAAGGCTAAGTCTCGGAAGTTAAAGTCTGGAGATGATGATCAGAATGAACATCAAAACCATCTTGCTATTATTCCTCTTCCTGAGCTAGATGATCCAGTAGCCGTTGAGCATAGTGATGTTCTAAATGACAACGTTACTAGAAGTTATGGTCATGAATCCTCTGAAATCTCTTCCAAATATTATCATCTAACTAGTACCCTTAACTTAAAGAGGAATGAATCCAAGTTGTTATCTTTTGAGCCTCATAAGCATCCTGAAAAGTCAGATGATGCAGAAAAGAGTGATGATTTGTCAGTGAGATATCATTATTGTTACGGTGCCCCTAAGTCACAGAAGAAGAGTTTATGCGGTCTGGATGATATGGTGGATCTTGGAAATAAATGGGAAGGGATAAGTGCTAATAAAGGAGTTCAAGAGAAAAAACATCATACAACATATTTAAGAAGTAGAGATCATGGAGAAGAAAAAAGATACAATTATAAAGACAGAACCTTAAATGCAGCTGCCTACAAGGATTTGATAAATTCATACTTGAAGAATATTAATACAAGACCAGACAAAGAAGAAGAGCCATCTATTGCTGATCAGTGGAAGCAAAGCAACACAACTAGCAGCATTGGGCGAAAGAGAGAAACTGAGATGCTCCATGAAGAGGATGCAGAAGAAGAATCTGAAATGGATATGTTGTGGAGAGAACTGGATGTGTCACTAGCATCATGTTATCTAGAAGAAACAGAGGATTCAAATGCTGCCACTTTCACTGAGACTTTGGAAAAGCCAAACGAAGGTTGTCCACATGAATTCAGAATGAATGAAGAAATTGGAGAATACTGCTATAGATGTGGCTATGTGAGGACTGAGATCAAATATATTACACCACCATTTATTCGACAATATTCAGTGTGTCACCAAGAGGAGAAGCACAGTGCTGAAGAAAATTCAAGGGCCAAGGCTGACGAGGATGATGACATGGATCTTTTCCCAACTCTAGACTCTCCTGAGAGACCTGTCTCTAAAGAAAATGATAATGTTTGGGCATTAATTCCCGAACTTAGAACAAAGTTGCATGCTCACCAGAAGAAAGCTTTTGAATTTCTTTGGCAAAACATTGCAGGGTCCATGGAACCAGGATGTATGGAAGCAGCATCCAAAAAACGAGGTGGTTGTGTGATATCTCATTCTCCTGGAGCAGGAAAAACTTTTCTCATCATTGCTTTTCTTGTTAGCTACTTGAAGTTATTCCCAGGGAAGAGGCCTTTAGTCCTTGCTCCAAAAACAACACTCTATACTTGGTACAAAGAATTTATCAAGTGGGACATTCCTATACCAGTGTATCTGATTCATGGACGTAGAACCTATAGGGTATTCAAGCAGAAATCAACGATTGTTATTCCTGGAGTTCCCAAGCCCACTGATGATGTCAAACATGTTTTGGATTGCCTTGAGAAGATACAAAAATGGCATTCGCATCCGAGTGTCCTGATCATGGGTTATACTTCATTTTTAACATTGATGCGAGAGGATTCAAAGTTTGCACACAGAAAATACATGGCTAAAGTGTTGAGGGAAAGCCCCGGGATCATGGTGCTGGATGAAGGGCACAATCCTAGAAGTACTAAATCAAGGCTGAGAAAGGTTTTGATGAAAGTACAGACGGAATTGAGAATACTGCTTTCTGGTACTTTGTTTCAGAACAATTTCTGCGAATACTTTAATACTTTGTGCTTGGCAAGACCAAAGTTTATTAATGAAGTACTGAAAGCATTGGACTCAAAATACAGGAGGAAGGGAAAAGTGGCAAAAAAAGCACGGCATTTATTAGAGTCGCGGGCTAGAAAATTCTTTTTAGACCAAATTGCTAAGAAAATTGACTCAGGTAAGGCTAGGGAGAGGCGGCAGGGTCTAAAGATGTTGAGAAACGTGACAAATGGTTTCATTGATGTTTATGAAGGTGGAAGTTCTGATGGTCTACCTGGTTTGCAAATTTATACATTGCTAATGAATTCAACTGATACACAGCATGAGATTTTGCATAAACTACACAAGAAAATGGCCAAGTGCAATGGATATCCTCTGGAGTTAGAGCTTTTGATAACTCTTGGTTCAATACATCCTTGGTTGGTCAAAACAGCTGTATGTGCTGAGAAATTTTTCACTCGGGAGCAATTGCTGGAGCTAGAGAATTGCAAGTTTGATCTAAAAATAGGGTCCAAAGTAAGATTTGTTTTGAGCCTTATCTATCGTGTTGTCAAGAAGGAGAAGGTTCTTATATTTTGTCACAATATTGCACCTGTCAGGTTATTTGTGGAATATTTTGAGAAGTACTTTGGATGGATAAAAGGTAGGGAAGTGTTGGTACTAACTGGGGAACTAGAGCTCTTTGAAAGGGGGAGAGTAATGGATAAGTTTGAGGAGCCTGGTGGAGTAGCAAAGATACTCCTTGCTTCAATTACAGCTTGTGCTGAAGGCATTAGTTTGACAGCTGCTTCTCGAGTGATCATGTTGGATTCAGAGTGGAATCCTTCAAAAACAAAGCAGGCTATTGCCCGTGCCTTTCGTCCTGGACAGCAGAAAGTTGTTTATGTGTATCAGCTCTTGGTGACAGGTTCATTGGAGGAGGACAAGTACCGAAGAACCACTTGGAAAGAATGGGTGTCAAGCATGATATTTAGTGAGGCCTTTGTGGAGGACCCTTCTCAGTGGCAAGCTGAGAAGATTGAAGATGATATACTCAGGGAGATGGTTGCAGAGGACCGTTCTAAATCATTCCATATGATCATGAAGAATGAAAAAGCTTCTACCAACAGATAAAAGTCTCACAAATAAGAAAGCATTGCCAAATCTCGGCTCATAAGCGAATCCAAACAGGACCATCGGAAGCTAAGTATCCAAGGCAGCAAGAGCATCAATAAGGTCCCAAGCCCAAATCTCAACAAAATTCTTTATGTAACGCCTGAAATGTTTATTTTTCTTTTTTAAATTTATTGAGCTGGTTAAATTTTAGTTTTTTAATTTGGGAAATTGGAGGTTTGCATTAGGTTGGGGAATAGCTGATCATTGATCCACTCCATTTCAAAAAGATGGGACTGGTGCCAATAGTTACATAGGTGTTGCCATATGTCTAAAATTCATCATTGCTTAAGTTAACTAGCATAGCTGCA 4386 0.396 MTSRKRRLNQLKHPFSSQPFEAVAFGSWQAVEFIKIEAGTMSMHFVDNHHMAMEKGPIADIRIRSRKATSSDCSRFLRPGIDVCVLAVPLQSDDSDAISIDPVWADAKISSVQRKPHDSECSCQFYVNFYVQQGSLGAELRSLRKEIKVVGINQISILQKLETTPCEDQHYRWTSSEDCSIISHTKLLLGKVLCDLSWLVVTSVIKKVSFCVRSLEDKLVYQVLRRDTVSTSLNNESDIDVVNFKTDNGMLVPIVSQVAASKTKRVGHVEESHEDNVSPSYNVEGLRRSKRRNVQPERYLGCDNVSEIDVGSFRNLPPVKIDTWKDDDDVDPELHMPLGCLFGLQQNCLEGNSNNHRKVKKANTCRELVVYNRNKAKSRKLKSGDDDQNEHQNHLAIIPLPELDDPVAVEHSDVLNDNVTRSYGHESSEISSKYYHLTSTLNLKRNESKLLSFEPHKHPEKSDDAEKSDDLSVRYHYCYGAPKSQKKSLCGLDDMVDLGNKWEGISANKGVQEKKHHTTYLRSRDHGEEKRYNYKDRTLNAAAYKDLINSYLKNINTRPDKEEEPSIADQWKQSNTTSSIGRKRETEMLHEEDAEEESEMDMLWRELDVSLASCYLEETEDSNAATFTETLEKPNEGCPHEFRMNEEIGEYCYRCGYVRTEIKYITPPFIRQYSVCHQEEKHSAEENSRAKADEDDDMDLFPTLDSPERPVSKENDNVWALIPELRTKLHAHQKKAFEFLWQNIAGSMEPGCMEAASKKRGGCVISHSPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWDIPIPVYLIHGRRTYRVFKQKSTIVIPGVPKPTDDVKHVLDCLEKIQKWHSHPSVLIMGYTSFLTLMREDSKFAHRKYMAKVLRESPGIMVLDEGHNPRSTKSRLRKVLMKVQTELRILLSGTLFQNNFCEYFNTLCLARPKFINEVLKALDSKYRRKGKVAKKARHLLESRARKFFLDQIAKKIDSGKARERRQGLKMLRNVTNGFIDVYEGGSSDGLPGLQIYTLLMNSTDTQHEILHKLHKKMAKCNGYPLELELLITLGSIHPWLVKTAVCAEKFFTREQLLELENCKFDLKIGSKVRFVLSLIYRVVKKEKVLIFCHNIAPVRLFVEYFEKYFGWIKGREVLVLTGELELFERGRVMDKFEEPGGVAKILLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLVTGSLEEDKYRRTTWKEWVSSMIFSEAFVEDPSQWQAEKIEDDILREMVAEDRSKSFHMIMKNEKASTNR 1310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01118 1310 SMART ultradead3 725 966 IPR014001 -
Pste8g01118 1310 CDD SF2_C_SNF 1104 1240 - -
Pste8g01118 1310 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1116 1276 IPR001650 -
Pste8g01118 1310 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 754 954 IPR014001 -
Pste8g01118 1310 Gene3D - 705 997 IPR038718 -
Pste8g01118 1310 Pfam Helicase conserved C-terminal domain 1112 1228 IPR001650 -
Pste8g01118 1310 Pfam SNF2-related domain 737 997 IPR000330 GO:0005524|GO:0140658
Pste8g01118 1310 Coils Coil 1305 1310 - -
Pste8g01118 1310 SMART helicmild6 1140 1229 IPR001650 -
Pste8g01118 1310 CDD DEXHc_ATRX-like 729 959 - -
Pste8g01118 1310 MobiDBLite consensus disorder prediction 684 711 - -
Pste8g01118 1310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1029 1291 IPR027417 -
Pste8g01118 1310 MobiDBLite consensus disorder prediction 558 599 - -
Pste8g01118 1310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 699 956 IPR027417 -
Pste8g01118 1310 Gene3D - 1084 1303 IPR027417 -
Pste8g01118 1310 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 53 1308 IPR044567 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01118 Pste-Chr8 5824923 5832536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01118 1161 1247 RAD5 or RAD16-like Gene Family AT5G22750 40.230 6.29e-11 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pste8g01118 SNF2_N 1.1e-17 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01118 8 5824923 5832536 Pste8g01118 8 5824923 5832536 ECH
Pste7g02247 7 20807531 20812168 Pste8g01118 8 5824923 5832536 PCT