Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01116 ATGGGTGTTTATAATCAAGTTTCTCTTAAACCCTTGGATTCTTCTAGAAAGAGGAAAAGTAGAAGCAGAGGAGATGGGTCTAGATCCGTGGCTGAGACTATTGCAAAGTGGAAGGAATACAATGAGCATCTTTATTCTGACAAAGATGATGGTAGGCAAACTCGTAAAGCACCAGCTAAAGGTTCGAAGAAAGGGTGCATGAAAGGGAAGGGAGGACCCCAAAACTCTGAGTGTAACTACAGAGGAGTTAGGCAGAGGACATGGGGAAAATGGGTTGGTGAGATTAGGGAGCCCAATAGAGGAAGTAGGCTTTGGTTGGGTACCTTTTCTACTGCCCAAGAAGCTGCTCTTGCTTATGATGAAGCTGCTAGAGCCATGTATGGTCCTTGTGCGCGCCTCAACTTTCCCCACATCACAGATTATGCTTCTGTTAAGGAATCATTGAAGGACTCTTCATTGGTTGCATCGTCTTCTTGTTCTTCGGCTGCAACTGCTGCTTCTGACACTACGACTACATCCAATCAATCAGAGGTTTGTGCAGCTGAGGATGTTAAAGAGAACTCTCGACCTGTCAATGTGAATGTTAAGATTAATTATTGTCACAAGGCTTATGAATCTGCCTCACCAACTAGCAGAATGAAGCAAGAACCTAAGGATGAGGCTGCAGATCACTTGGACCTGGACCCCGGGACTGGGGAAATCCAAGATTTCAGACATGAAGGAACAATTGATGCTGGGCAGGCTGCAGAGGATGTAAACAACAATCGGATGGACCTTTCATGGATTGATGGCTTTGATTTTAATGACGATTACTTGAATAACTTTTCCACGGATGAGTTATTTCAGGTGGATGAACTTTTGGAGCATATAGATAATAAGCTGATTGATGACTCTGGGTTGATGCAAGGTTTGGATTCTGGACAAATGAATTTTCCTGGAGATAGCAATTCTCAGGTTGATACGCCTTCAAGCTTTATTTATCAGTTGCAAAATCCAGATGCCAAGTTGTTGGGAAGTTTGCCCCATATGGAACAGACACCATCAGGTGTGGATTATGGATTAGATTTCTTGAAAACAGTAGAGCCAGGGAACTATAATGGTGGAGGGGAAGAACCTCGTTTTCTTAATTTGGATGAACCATGA 1143 0.4331 MGVYNQVSLKPLDSSRKRKSRSRGDGSRSVAETIAKWKEYNEHLYSDKDDGRQTRKAPAKGSKKGCMKGKGGPQNSECNYRGVRQRTWGKWVGEIREPNRGSRLWLGTFSTAQEAALAYDEAARAMYGPCARLNFPHITDYASVKESLKDSSLVASSSCSSAATAASDTTTTSNQSEVCAAEDVKENSRPVNVNVKINYCHKAYESASPTSRMKQEPKDEAADHLDLDPGTGEIQDFRHEGTIDAGQAAEDVNNNRMDLSWIDGFDFNDDYLNNFSTDELFQVDELLEHIDNKLIDDSGLMQGLDSGQMNFPGDSNSQVDTPSSFIYQLQNPDAKLLGSLPHMEQTPSGVDYGLDFLKTVEPGNYNGGGEEPRFLNLDEP 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01116 380 CDD AP2 78 137 IPR001471 GO:0003700|GO:0006355
Pste8g01116 380 FunFam Ethylene-responsive transcription factor 2 78 137 - -
Pste8g01116 380 SUPERFAMILY DNA-binding domain 79 137 IPR016177 GO:0003677
Pste8g01116 380 PRINTS Ethylene responsive element binding protein signature 80 91 IPR001471 GO:0003700|GO:0006355
Pste8g01116 380 PRINTS Ethylene responsive element binding protein signature 102 118 IPR001471 GO:0003700|GO:0006355
Pste8g01116 380 ProSiteProfiles AP2/ERF domain profile. 79 136 IPR001471 GO:0003700|GO:0006355
Pste8g01116 380 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 15 346 - -
Pste8g01116 380 SMART rav1_2 79 142 IPR001471 GO:0003700|GO:0006355
Pste8g01116 380 MobiDBLite consensus disorder prediction 1 32 - -
Pste8g01116 380 Gene3D AP2/ERF domain 79 138 IPR036955 GO:0003700|GO:0006355
Pste8g01116 380 MobiDBLite consensus disorder prediction 45 79 - -
Pste8g01116 380 MobiDBLite consensus disorder prediction 12 26 - -
Pste8g01116 380 Pfam AP2 domain 78 128 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01116 Pste-Chr8 5809155 5810297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01116 16 378 AP2-EREBP Transcription Factor Family AT2G40340 41.192 5.71e-74 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pste8g01116 AP2 1.2e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01116 8 5809155 5810297 Pste8g01116 8 5809155 5810297 ECH