Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01112 ATGACAGCTGCTCCGAGAAGACATCGTGTTGAAGATGAAATAAGCTCACAGGCTAAAGCTGGATTGAGAATGTTGTTTGCACTTGATGAACAAAGAGTAGCTCAAGCTTTTACTTCCCCTTTTCCTAATTTTGTTAAAATCATGAAAATGTTCAATGTCAGTGGATCATACACTTTGAAAATCCCATACCAGTTCTCAGCTGCACATCTCCCAACATACAAAACTGAAGTTATACTTCGCAATTCAAGAGGTGAATGTTGGACTGTGAACTCGGTTCCAGATGCAAAAGGCAGAACAGTTCACACCTTTTGTGGGGGATGGGTGGCCTTTGTTCGGGATAATGACATCAATTTTGGAGACACGTGCATTTTTGAACTCGTTGCTCAATGTGAGATGCAGGTTTATATATCTGGGGTTGGAAAGGAAGGGTTTGACCTTCAAAATGAGCATTTAAAACTTTCTAATGGATTAGCTGACCAACCTTCTAGCTGCTAACTTGGTTTGTGCAAAATAATCTTCAACGAGGATGCTTATTTTAAAAGTCGCAAAGATCTTTTGCATTCTATGTACATATTTTAGTAATTTCACACTGATGTATATTTAACATCGCCCCTCAAATCCCAATTTATAGTCTCACCGGTAGGTAATGTCTTAGAATATAGTACTTGCTGATGCCTGTTATGAGTTTGTTTGAAAAATCAGTTGCGTGTTACTTAACGACAGACAAAAGTTATTTTTACCATTTTTATATAATAAGGTCCTAAA 765 0.3752 MTAAPRRHRVEDEISSQAKAGLRMLFALDEQRVAQAFTSPFPNFVKIMKMFNVSGSYTLKIPYQFSAAHLPTYKTEVILRNSRGECWTVNSVPDAKGRTVHTFCGGWVAFVRDNDINFGDTCIFELVAQCEMQVYISGVGKEGFDLQNEHLKLSNGLADQPSSC 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01112 164 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 29 142 IPR044837 -
Pste8g01112 164 Pfam B3 DNA binding domain 44 131 IPR003340 GO:0003677
Pste8g01112 164 CDD B3_DNA 42 136 IPR003340 GO:0003677
Pste8g01112 164 ProSiteProfiles B3 DNA-binding domain profile. 44 140 IPR003340 GO:0003677
Pste8g01112 164 Gene3D - 29 139 IPR015300 -
Pste8g01112 164 SUPERFAMILY DNA-binding pseudobarrel domain 37 138 IPR015300 -
Pste8g01112 164 SMART B3_2 44 140 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01112 Pste-Chr8 5786500 5787363 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01112 39 143 B3 DNA Binding Superfamily AT5G42700 34.286 4.30e-15 67.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pste8g01112 B3 1.3e-13 CL0405