Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01041 GAAAAAGAAGAAGAACAACTTATAATTGATGATGATGAATTCTCCAGAACCTTCCAAGAACAACAATGGCACTTCTTCTGCTTCCAATAATAACAACAACAATGATGCTACTTCATCAGAGTCGCCTCAATTACAAGATTCCCCTTATTTTAGATATGTTGCAACTTTATCTCCGTTACCCTTCAAGGCTTCTCATTCGTCACGAAGTTTTGCAGGGCCGAGTTCTCCAATCCGTGTATTCAAATCCCCACGCATTAGTCACCATGAATCACAGCTCACTGAAAGGCGCATTCAGTCGCTGAATGGAGTACAATCTCAAATTGAAAATGGAGGCAATAGTCTTGGTGAAGATCCTGAAAATTCCAGGAAATCAAACTCTCAGCAGTCACTCCCAGAGAGGTTTATAACTGACACTCAGAAGGTTTTTGACTCCGAGAATGATGCAAATGCTGAACACTACAGTCCTACATCGTCTGTTGATGATTTTCTGGCAGATCCTGGGAATATTGATCAAATGTATTTAGCTGAGAAGGATATGGAACAATGTACAGATGCAGCTGAAATATCACCAAGTGACCCAACTCAGTCAAAGAAAAATATATCAAAATTTGACAGGACAGATGGTCCTGGTGATAAAGCAGAGGATTCTAACAAGGTTCATCAAGAAAAGGCAGTATATGGTGAAGAACCTGAAAAGGTGGATGAGGGGAAAAAAGACGTTGAATGGGCTTCTCAAGAGCCCAGCAAGTTAGAATCCATTTTAGCTGCACATGCTTCTAAGAAACAATATAGTCATGATCCACTTCCCCAGGATGTTAAAGGATGTGAAGATTACAGTGAGAATATCTTGCAAGACAGTTCTAAGGCTACTCTAAACTACCATGGAATCAGTAGACGCTGCCTACAATTTGGGGAAGCTGCTTCCAATGCTCTTGGAAGTAACAAATCTCATGTGAAACTGAATGCAACGTCGAACAACATGAAAACGGTAATGCCGTCTGAACCTGTCACTTCCTTGTGTCCTCAGCAGCGAAGTAGTGGCAACTTCCCCTTGATAGGTCCCAAACCATCGGGTATCGGGTTGCATTTAAATAGCATCATAATTGCTATTCCAGCTGGTCAGGCTGCAACTACGGGCGTGAAATTACCCGATGGTTCACAGGGGATGAATTCCACACCGTCCATAAGGTTGCAAAGAATTGCGAATGTGAAGAGATCCTTACTTTCTTCTAATGTTGATGGGCAATCACCAATTGATATTAAAAATGAGAACCAGGGAATTGTTGCTACAGTAACAGATGCTGAAAATTCTGAGTTAAACGAACCTCCTAGTCCCAGCAAGAAAATTGCTGCTAATAACAATGGTCGTAAACACTGCAATTGTAAGAAGAGTAAATGTGTAAAACTTTACTGTGAATGTTTTGTTGCTGGAAATTATTGCATCGACCTTTGTGGTTGCCAAGACTGCACAAACAGACTTGAATATGCAGAGACAGTTACGGAGACTAAACAACAAATTGAATCCCGTAATGCAGATGCATTTACTCCCAAGGTTATTTCTTCAAATAATATGGAGGATAACAATCTGACAACACCATCATCGGCAAGACACAAAAGAGGTTGCAATTGCAAAAAGTCAAAATGTCAGAAAAAATATTGTGAATGTTTCCAGGCTAATGTTGGATGCTCTAGCGCGTGTCGATGCGAGGAATGTAAGAATTCATATGGCAAGAGAGAAGATTATGTTGCATATGAACGCACTTCAAGCACAGAAAGGATGAGCAGCAGTGTTGCAAAAGAATCTGACTGCACATTTCACAGTGAACTGGACAAGGTGGTTGGCAACACTGCTTATGATCAACACCGCCTCTCACTTATAACTCCATCATTCCAATGCTCCGACCAAGGCAAAGAGACTTCAGAATACAGGGTTATTTCTGCAAACTGTCTACATTCCCCTGGCTCTGACGTCAATATGTTTGCATCTAGTGCAAACTACACTAAATCTTCTGAAAATTTTCACAGCACTCATGCACTTCTGCAAACAAGTGAGATGTTGGGAACTGCCCCCTATGATCCGCAAATTGAACGCAACAATGTTATGTTACTTCATCCTACTCCTCCTCTATTCAATTCTGTGCAGTCTGGTGCTTCGTTAGCATCTTTTAAATATTTCTCAATCCCAACTCCCTGGGAATTTATTAACCAGTTACTTGGCAGTGACAACTCTCTTAATTGGCATAGTTCCTCTTCCTCTCATACCCCAAACACTGCAGTAGGAGAAGCACAATATTTACTTTGTCCAGAATCATCAGATAGCAGGCTCTTCAAAAATGAAATACCTGATATACTGAAGGAAGTTTCAACTCCTGTGATTTCTGTAAAAGTAAATTCCCCAACCCAAAAACGAATTTCTCCTCCCCAGAGTCGTCAATATGGGATTGGATCAAGCTCCTCTGGAGGATTTAGAAATAGCAGGAAATTTATATTGGAAGGAGTACCTAACTTCCCTTCATTGTCTCCTTGCGTTGATTCCAAAGGCAATGGTAATGGGGATTTGGGTAACAGTCAGAGC 2575 0.4101 MMMNSPEPSKNNNGTSSASNNNNNNDATSSESPQLQDSPYFRYVATLSPLPFKASHSSRSFAGPSSPIRVFKSPRISHHESQLTERRIQSLNGVQSQIENGGNSLGEDPENSRKSNSQQSLPERFITDTQKVFDSENDANAEHYSPTSSVDDFLADPGNIDQMYLAEKDMEQCTDAAEISPSDPTQSKKNISKFDRTDGPGDKAEDSNKVHQEKAVYGEEPEKVDEGKKDVEWASQEPSKLESILAAHASKKQYSHDPLPQDVKGCEDYSENILQDSSKATLNYHGISRRCLQFGEAASNALGSNKSHVKLNATSNNMKTVMPSEPVTSLCPQQRSSGNFPLIGPKPSGIGLHLNSIIIAIPAGQAATTGVKLPDGSQGMNSTPSIRLQRIANVKRSLLSSNVDGQSPIDIKNENQGIVATVTDAENSELNEPPSPSKKIAANNNGRKHCNCKKSKCVKLYCECFVAGNYCIDLCGCQDCTNRLEYAETVTETKQQIESRNADAFTPKVISSNNMEDNNLTTPSSARHKRGCNCKKSKCQKKYCECFQANVGCSSACRCEECKNSYGKREDYVAYERTSSTERMSSSVAKESDCTFHSELDKVVGNTAYDQHRLSLITPSFQCSDQGKETSEYRVISANCLHSPGSDVNMFASSANYTKSSENFHSTHALLQTSEMLGTAPYDPQIERNNVMLLHPTPPLFNSVQSGASLASFKYFSIPTPWEFINQLLGSDNSLNWHSSSSSHTPNTAVGEAQYLLCPESSDSRLFKNEIPDILKEVSTPVISVKVNSPTQKRISPPQSRQYGIGSSSSGGFRNSRKFILEGVPNFPSLSPCVDSKGNGNGDLGNSQS 849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01041 849 ProSiteProfiles CRC domain profile. 446 567 IPR005172 -
Pste8g01041 849 MobiDBLite consensus disorder prediction 1 37 - -
Pste8g01041 849 MobiDBLite consensus disorder prediction 86 126 - -
Pste8g01041 849 MobiDBLite consensus disorder prediction 788 812 - -
Pste8g01041 849 MobiDBLite consensus disorder prediction 189 229 - -
Pste8g01041 849 MobiDBLite consensus disorder prediction 832 849 - -
Pste8g01041 849 MobiDBLite consensus disorder prediction 52 229 - -
Pste8g01041 849 SMART CXC_2 527 568 IPR033467 -
Pste8g01041 849 SMART CXC_2 445 486 IPR033467 -
Pste8g01041 849 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 23 837 IPR044522 GO:0003700
Pste8g01041 849 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 530 565 IPR005172 -
Pste8g01041 849 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 448 483 IPR005172 -
Pste8g01041 849 MobiDBLite consensus disorder prediction 827 849 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01041 Pste-Chr8 5471502 5476916 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01041 770 832 CPP Transcription Factor Family AT4G14770 44.776 2.73e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Pste8g01041 TCR 5.8e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g01041 8 5471502 5476916 Pste8g01041 8 5471502 5476916 ECH
Pste8g01041 8 5471502 5476916 Pste2g03661 2 39635363 39637993 PCT