Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g01023 ATGTTCTGCTTGTGTCAGGTTTTTACAAATACAATGGGAAGAAAAAAGGCAGAGGATGCTGGTTCTTCTGCAAAGACCAAGGCTGGTGGCAAAGATGCTTCTAAGAAGGAAAAATTTTCTGTCTCTGCCATGCTAGCCAGTATGGATGAAAAGCCTGATAAACCTAAAAAAGCCGTTTCTACCTCCAAGCCAAAGCCAAAATCTGCTCCAAAAGCTTCCACATATACTGATGATATTGATCTTCCTCCGTCTGATGATGAAGATGATGATCTCTTAGAAGAGGAGGCACAGCAAAATAATGCAGCTAAACGGTCCAGTCAGCAGCAAAGGTCTGATTTGAAGCCACTTGAAGTGTCTATTGCTGAGAAAGAGTTGAAAAAGCGTGAAAAGAAGGATATTTTAGCTGCACATGCTGTTGAACAGGCAAAGAAAGAGGCTCTTAAGGATGATCACGATGCTTTCACTGTGGTAATTGGAAGCCGGGCTTCAGTGCTTGATGGAGAAGATGATGCCGACGCTAATGTCAAAGATATAACAATAGAAAATTTCTCTGTGTCTGCTCGGGGTAAAGAACTTCTGAAGAATGCATCTGTGAAGATATCTCATGGGAAAAGGTATGGTTTGGTTGGGCCCAATGGAAAGGGCAAGTCCACACTGTTGAAGCTTCTTGCTTGGAGGAAGATACCAGTACCTAAGAATATTGATGTCCTTCTGGTTGAACAAGAGGTAGTTGGTGATGATAAAACAGCTCTTGAAGCCGTTGTTTCAGCTAATGACGAACTTGTTAAAACTCGACAAGAAGTTGCCTCTTTGCAGAATGCAGCTTCAGTTGAAGAAAGTGTAGACAAAGATAATGATGAGGAAGACAATACAGGAGAGAAGCTAGCAGAACTATATGAAAAACTACAGCTGATGGGATCTTATGCTGCTGAAGCTCAGGCTTCAAAGATATTAGCTGGTTTGGGTTTTACAAAGGATATGCAAGGTCGTCCTACAAAATCCTTTAGTGGTGGCTGGAGGATGAGAATTTCTTTAGCTCGAGCACTTTTTGTGCAACCAACTCTGTTATTGCTTGATGAACCCACAAATCATCTTGACCTGAGGGCTGTTCTCTGGTTGGAAGAGTATTTGTGCCGTTGGAAGAAAACATTGGTGGTTGTTTCACACGATAGGGATTTTCTCAATACAGTGTGTACTGAAATTATTCATCTCCATGATTTGAAGCTTCATTTTTATCGTGGAAATTTTGATGATTTTGAGAGCGGGTATGAACAGCGTCGGAAAGAGATGAATAAGAAGTATGAGATTTATGACAAGCAATTGAAAGCAGCTAAAAGGAGTGGAAACCGGGTTCAACAAGAAAAGGTTAAGGATCGAGCAAAGTTTGCAGCAGCTAAAAGCAAGGGAAAGGGAAAGGTTGATGATGATGAGGCCCCACCAGAGGTGCCTCAAAAGTGGAGGGATTACAGTGTGGAGTTCCATTTTCCTGAACCAACTGAGCTCACACCCCCACTTCTACAGCTTATTGAAGTCAGCTTTAGCTACCCTAACCGGGAGGATTTCAGGCTCTCAAATGTTGATGTTGGTATTGATATGGGGACTCGTGTTGCCATTGTTGGACCTAATGGAGCTGGAAAATCTACGTTGCTGAATCTTCTGGCTGGTGATTTGGTTCCTTCTGAGGGTGAAGTTCGAAGGAGTCAGAAGTTGAGGATAGGAAGATATTCTCAACACTTTGTAGACCTTCTAACAATGGATGAAACAGCTGTGCAGTATCTTCTCCGTCTCCATCCCGATCAGGAGGGACTGAGCAAGCAGGAGGCAGTCCGTGCAAAACTTGGTAAGTTTGGACTACCAAGTCATAACCATCTTACTCCTATTGCCAAACTATCAGGAGGGCAGAAAGCTCGGGTGGTCTTCACATCAATTTCCATGTCAAAACCACACATTTTGTTGTTAGATGAACCCACCAATCATCTGGACATGCAAAGCATTGATGCATTGGCTGATGCACTGGATGAATTCACCGGTGGAGTTGTTCTTGTTAGTCACGATTCAAGATTGATATCGCGTGTATGTGAGGACGAAGAAAGGAGTCAAATCTGGGTTGTTGAGGATGGTACTGTCAAAACTTTCCCAGGAACATTTGAGGATTACAAAGAGGACTTGCTGAGAGAGATTAAAGCGGAAGTTGATGATTGA 2202 0.4278 MFCLCQVFTNTMGRKKAEDAGSSAKTKAGGKDASKKEKFSVSAMLASMDEKPDKPKKAVSTSKPKPKSAPKASTYTDDIDLPPSDDEDDDLLEEEAQQNNAAKRSSQQQRSDLKPLEVSIAEKELKKREKKDILAAHAVEQAKKEALKDDHDAFTVVIGSRASVLDGEDDADANVKDITIENFSVSARGKELLKNASVKISHGKRYGLVGPNGKGKSTLLKLLAWRKIPVPKNIDVLLVEQEVVGDDKTALEAVVSANDELVKTRQEVASLQNAASVEESVDKDNDEEDNTGEKLAELYEKLQLMGSYAAEAQASKILAGLGFTKDMQGRPTKSFSGGWRMRISLARALFVQPTLLLLDEPTNHLDLRAVLWLEEYLCRWKKTLVVVSHDRDFLNTVCTEIIHLHDLKLHFYRGNFDDFESGYEQRRKEMNKKYEIYDKQLKAAKRSGNRVQQEKVKDRAKFAAAKSKGKGKVDDDEAPPEVPQKWRDYSVEFHFPEPTELTPPLLQLIEVSFSYPNREDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPSEGEVRRSQKLRIGRYSQHFVDLLTMDETAVQYLLRLHPDQEGLSKQEAVRAKLGKFGLPSHNHLTPIAKLSGGQKARVVFTSISMSKPHILLLDEPTNHLDMQSIDALADALDEFTGGVVLVSHDSRLISRVCEDEERSQIWVVEDGTVKTFPGTFEDYKEDLLREIKAEVDD 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g01023 733 Coils Coil 254 274 - -
Pste8g01023 733 CDD ABCF_EF-3 506 708 - -
Pste8g01023 733 Gene3D - 475 732 IPR027417 -
Pste8g01023 733 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 178 438 IPR003439 GO:0005524
Pste8g01023 733 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 485 719 IPR027417 -
Pste8g01023 733 Gene3D - 175 459 IPR027417 -
Pste8g01023 733 Coils Coil 427 447 - -
Pste8g01023 733 ProSitePatterns ABC transporters family signature. 335 349 IPR017871 GO:0005524|GO:0016887
Pste8g01023 733 MobiDBLite consensus disorder prediction 98 114 - -
Pste8g01023 733 MobiDBLite consensus disorder prediction 80 95 - -
Pste8g01023 733 FunFam ABC transporter F family member 4 471 733 - -
Pste8g01023 733 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 432 IPR027417 -
Pste8g01023 733 SMART AAA_5 202 407 IPR003593 GO:0016887
Pste8g01023 733 SMART AAA_5 532 708 IPR003593 GO:0016887
Pste8g01023 733 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 148 726 - -
Pste8g01023 733 FunFam ABC transporter F family member 4 176 459 - -
Pste8g01023 733 Pfam ABC transporter 523 658 IPR003439 GO:0005524
Pste8g01023 733 CDD ABCF_EF-3 178 408 - -
Pste8g01023 733 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 506 731 IPR003439 GO:0005524
Pste8g01023 733 MobiDBLite consensus disorder prediction 13 116 - -
Pste8g01023 733 Pfam ABC transporter 193 363 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g01023 Pste-Chr8 5401317 5403518 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g01023 506 709 Calmodulin-binding Proteins AT2G36910 28.378 1.77e-10 62.8