Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00992 GTTTTGATGAGAGTGATTTTGAAGTCTAAAATTTGTTAGCGCAAACAGCGATCACCCCTGAACTTGGTAAGAGCGTAACTCCGAAAGAGTAGAAGAAGAGCTTGAATCGTAATGGATAACTCTGACCACGACGAACCCGACAAGAAGAGGCCTCATCTCACCTCTGTTTCTTCCCGCACGCCTCGAAACTCCATCATCTCTCCTACCGCTGACGCAGGAGTCTTACAGTTCCAGAATCAGCATCTTGTTCAACAGATAGAACTCCAAAAACATGCTTTGCGTAGTCTTCAAGAAAATATTGGAGAATTGAAAGCAAAGCAAAGTTCTTATGACGATTTGTTAATTTCATTGAATCAACTCTGGATTCAGTTGGTTGACGATATGATTCTTCATGGAATACAAGCTGGGAGAGGCAAAAACAAAGACACATTGCGACATTTAACTGACATTGATAACCCTCAAGGGTCACTTCCTCTGTGTCCTGCTGAGGATATATTTCTATGTCGATTAATCCAGAAAGATTCTATTAAAGGAACCAGTGATGATGAGATCATTAGTTATGTTGAGGGGGCCCTTGCTTTGCGTCAGTCATTTACAAGGGAGTTGTTGAAACTCTTGCAAGATAACATTGATGATCACATGGAAAGAGCAGGCAGTATAGCTCAGGCTTTACGTAGAGAATTATCTTCGGAAGATGCTACAATCCAAATGACTAAGATTGATGATATGATGAAAGAGGAGGCAAATAATTTACAAGAAGTGATTGATACTCTCCATGCAAAACATACGGAGTATACTGTTGGTATTCAAAATTCTATCAATGAGTGCTTACAAGATCAACCTGACATAAAACGCCTTACAGGTGAGCTTGATGAGATTGTGGCTGAACTTGAAGAGAGTAGAAGAAAACTAGTCAATCTGGAAATGCAAAAAGATGCAGCGATAGGGATTAATTCTCCCAATGCATATGCGGTGAATGGAAACCTGCCTCCTGAAAACATTACAAACAGCAACATGGGTGCATGTGAGTTGAAGGATTCAATTGAGGAAGCAAAGATAGTGGATGCTAATCGTCTTTCTGAGCTCCAGGATGCACAGGAAGACAATCAGACCTTGATAAAACAATTCCAAGATCTTCAGAATGACCTGAAAGATGATAAGTACGTTCGCTCTTCCCGAATATACTCTTTGGCTAATGATCAACTTCAACATTGGATGACTGAATTGGCCCGATACAAAACATTGGTAGAGTCTTTGCAGGCTGGCAGTGTTCATGTTGCAAAATGGGAGAGTGAACTAAATTTGAAATTGGAGTCTGCTGATACTGCAAGGCAGGTTCTTGACAATTCTGACCATAGGATTGATGAACTAGAGCTTCAGTTGCAGAAGTGTATTATTGAAAAGAATGATCTTGAAATTAAAATGGAAGAAGCTAAACAGGATACTGGTCAGCCTATAACTTCTGTATTTAGACTTGTGGTACACATGATTGGATCTCAGTTTCTTACAGTATTAAATGTTTCAGGAAGAAAAGACATAAAATCTGAGTTTCATGTTATGGCATCAGCTTTATCTAAAGAAATGGGGATGATGGAAGCTCAATTAAAGAGATGGAAAGATGCAGCTCATGAGGCTGTATCATTACGTGAGAAAACACATTCACTAAGAGAAGTGTTAAGCATCAAGACAAGCGAACTTAAGAGCCTCACAAACACATGTGATGAACAGGCTTTGGAAATCAAGTCTTTAAAAACATTTAATGAAAAGTTACAGAAGGGAACTCAGGAATTAGAATTTGTTCTGGATATGCATGGCCAGGAAAATTATGAGAAAAGTTATTCAGAAGTTAAAGAGTCTGAAAGTAAAGCTCACTCTCAAGCTGAAATACTGAAAAATGCTTTAGATGAACATAGCCTAGAGTTGAGAGTAAAAGCTGCCAGGGAAGCCGAAGCTGCTTGTGAAAAAAGGCTTTCTTGTACAGAAAATGAAATAGAGGAGTTAAGGATCAAGCTGGATGCATCTGAGAGGGATATTTTGGAGCTGACTGAGGCTGTTAAAGTTAAAGATGCTGAGGCAGAGGCATATATATCTGAAATTGAGACTATTGGTCAAGCATATGAAGATATGCAGACACAGAACCAAAATCTGTTGGACCAGGTGATCGAGAGGGATGACTATAATATCAAGCTTGTATCAGATAGCGTGAAGACAAAACAGGCGCACAACACTTTAATATCCCAGAAACAGGCCTTAGCTAAGCAACTTCAACAAATTAATACTTCAATAGGAAGTTCAAAGACAAGGATTGCACACTGTGAACATCAGATGAAAGCTATTATATCTGACGCCGTCAAATTTGATGAAGAAGAAAAATGCCTTGCAATTGCCCTGGAATTCTTAAAGTGGGAATTGGCTGCTGCCGAGAAGGAATTAAAGTTGCTCAAGTCTGCCGTGTCCTCTTCAGAGAAAGAACACGATCAAATTCAGAAAGATACGGAAGCTATTGAAATGGAGTTGGAGAGTGAAAGGAGTTTAAGGAAGAAGCTTGAGGAAGAACTCAAGGAATTGAACAGTAAAATTGCTGAGCTGACTTCTGAAACCGGAGAAACCAAAATACAAAAACTCGAAAAAGAAATAAAGATTTGCAAGAACATGATCAAGTGTACTGTCTGTACTGATCGTCCAAAGGAGGTTGTGATTGTCAAGTGCTATCATCTGTTTTGCAATCCATGCATTCAAAGAAATTTAGAGCTTCGTCACCGCAAATGTCCTGCATGTGGAACAGCATTTGGACAGAGTGATGTTCGCTTTGTAAAAATATGAAACAGATGTTCATTTTAAGATTTTGGATCCTTGATCATTGTTGTTTCAAACACTCATTCTTTTCCACAATAAATATACTCATTAGGTGCACTTATTCACCATCTTTATACATAACAAAACCCGTTTCTCTTAATCGAGGATAAATACAAATTTGAAATATACATTGTCACTTCTTTTAATATGCAAGCCAAAACAGTATG 3023 0.3864 MDNSDHDEPDKKRPHLTSVSSRTPRNSIISPTADAGVLQFQNQHLVQQIELQKHALRSLQENIGELKAKQSSYDDLLISLNQLWIQLVDDMILHGIQAGRGKNKDTLRHLTDIDNPQGSLPLCPAEDIFLCRLIQKDSIKGTSDDEIISYVEGALALRQSFTRELLKLLQDNIDDHMERAGSIAQALRRELSSEDATIQMTKIDDMMKEEANNLQEVIDTLHAKHTEYTVGIQNSINECLQDQPDIKRLTGELDEIVAELEESRRKLVNLEMQKDAAIGINSPNAYAVNGNLPPENITNSNMGACELKDSIEEAKIVDANRLSELQDAQEDNQTLIKQFQDLQNDLKDDKYVRSSRIYSLANDQLQHWMTELARYKTLVESLQAGSVHVAKWESELNLKLESADTARQVLDNSDHRIDELELQLQKCIIEKNDLEIKMEEAKQDTGQPITSVFRLVVHMIGSQFLTVLNVSGRKDIKSEFHVMASALSKEMGMMEAQLKRWKDAAHEAVSLREKTHSLREVLSIKTSELKSLTNTCDEQALEIKSLKTFNEKLQKGTQELEFVLDMHGQENYEKSYSEVKESESKAHSQAEILKNALDEHSLELRVKAAREAEAACEKRLSCTENEIEELRIKLDASERDILELTEAVKVKDAEAEAYISEIETIGQAYEDMQTQNQNLLDQVIERDDYNIKLVSDSVKTKQAHNTLISQKQALAKQLQQINTSIGSSKTRIAHCEHQMKAIISDAVKFDEEEKCLAIALEFLKWELAAAEKELKLLKSAVSSSEKEHDQIQKDTEAIEMELESERSLRKKLEEELKELNSKIAELTSETGETKIQKLEKEIKICKNMIKCTVCTDRPKEVVIVKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRFVKI 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00992 903 MobiDBLite consensus disorder prediction 1 17 - -
Pste8g00992 903 Coils Coil 760 836 - -
Pste8g00992 903 SMART ring_2 851 889 IPR001841 -
Pste8g00992 903 Coils Coil 246 273 - -
Pste8g00992 903 SUPERFAMILY RING/U-box 850 894 - -
Pste8g00992 903 ProSiteProfiles Zinc finger RING-type profile. 851 889 IPR001841 -
Pste8g00992 903 Coils Coil 403 444 - -
Pste8g00992 903 Coils Coil 662 682 - -
Pste8g00992 903 Coils Coil 42 69 - -
Pste8g00992 903 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 832 902 IPR013083 -
Pste8g00992 903 ProSitePatterns Zinc finger RING-type signature. 866 875 IPR017907 -
Pste8g00992 903 Coils Coil 613 647 - -
Pste8g00992 903 Pfam Zinc finger, C3HC4 type (RING finger) 850 892 - -
Pste8g00992 903 PANTHER RING FINGER PROTEIN-RELATED 7 903 IPR013956 GO:0004842|GO:0010390
Pste8g00992 903 Coils Coil 325 345 - -
Pste8g00992 903 MobiDBLite consensus disorder prediction 1 28 - -
Pste8g00992 903 CDD RING-HC_Bre1-like 843 899 - -
Pste8g00992 903 SUPERFAMILY Tropomyosin 710 847 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00992 Pste-Chr8 5208540 5217955 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00992 824 898 RAD5 or RAD16-like Gene Family AT5G05130 26.190 7.65e-07 51.2