Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00987 ATTATTAACTTGTCGGGTTTCACATTCAAAGATCCAAAATGTTTCGAAGATTGCAGAACCACAACCAGGAAACTCTAATCTAATTTGACGCCAACTTTCATCCAATTGGAATATTATTAAATCTCTTTTTAAGATTTCACATTTGATTCTTCTCAATTTTATCTCCGATTCTCAGTTTGTACCTTTGTTTTGTTTTTAGTATTTTAATTTTCCGGGAATTGTTTTTGTTATTTTATTGCTTTTAGTCTTTGGTCAATTTTCACTGTCTCCTGATGATCATTTTACCTTGTGGGGTGAGTTAATTTGAGAGTGTTGTGCGCTGATTTTTTCTTAAAGGCTCAAAGGGTCTTCTGGGTTTGATCGAACCACCAAAAAAGTCTCTTGTTATCATTTCAACGCTACCAGATGCCAGAAAACAGGCAGGTTCTCAGGAATGTTGATTCTACACCATCTGGTGACAACATTGAAGGTGGTGCAGATTTTTCTGAAGCAATTCGACGTCTGAAAATGAATGATAATTGGGATAGAGATGCTGCAGCTCAATCAACCCAGTTTCCAGATCGTCCCGGTGAACCTGAATGCTTATATTATTTGCGAACTGGAATGTGTGGTTATGGGAGTAACTGTCGCTACCATCACCCTGCTCATATTTCTATTGGTACTCATTATGGTGAAGAACTCCCTCAAAGGGTCGGCCAACCTGATTGTGAGTATTTTCTTAAGACAGGGACATGCAAGTATGGATCAACATGTAAATATCATCATCCAAAGGACCGGCGAGGTGCTGCTCCTGTGTCATTCAATACTTTAGGTCTTCCTATGCGTCAGGAAGAAAAATCATGTCCCTATTACATGAGAACTGGGTCTTGTAAGTTTGGTGTTGCATGCAAGTTTCATCATCCACAGCATGCGTCCTTTGGAGCATACCCCTTGGCTGGATCTCCTACCTCAAATATTATTCCTACATCAGGTTTACCATATGCTGGAGGATTTCCTGCATGGTCAGTACCAAGAATGTCCTATTTATCTGGACAAGGCCTTCAATCTTATGTGCCCCCTTTTCTGTCTTCTTCGCAAGGCATTATACCTGTGCAGAGCTGGAACAACTACATGGGAAGTATGAACCCTGCAATGCCTACTGGTTTTCTGGGATCAAATCTTGTTTACGATTTCATGAATCTGGGCGAGTCACTTTTTGGTGCGCAGGCAATGAATTCACCTCTCCCAAATAGACCTGATCAACCAGAATGTAGATACTTCATGAGCACTGGTACCTGCAAATATGGAACCGATTGCAAGTTCCACCACCCAAAAGAAAGAATATCTCAATCATTAATAAATCCACTTGGCCTTCCTGTGAGACCTGGGCAGGCTGTATGCTCTTATTACAGAATCTATGGAATGTGCAAGTTTGGCCCAACGTGCAAATTTGATCATCCAGTTTTGACTATCCCTCAGAACTATGGCTTGACCTCACCTGCTATGTCTGTACTTGATGCTCCTCTCATTAGTAGTAATCCCAGAGGGCTATCAACTGTACAACCATCTGAAACATCTCCATCTAAATTATCAAATGACAACAAACTTCAGAATTCTGATGCAAAAGCTACTACAGATGATTCATCCAAACAAGCTGATACTACGTCAAATTCCTTTCCAGCAACCTCAGAGCCTTTACACGACTAAACTACTTGAAGTTTGATCTTTTGTTTTGGACATTTTATTTTTCCCCACATTTTCAGCAGAAGTATATCATACATACCATCTATTCCCCCCTTTTCACCTGCAATTCTGTGGAGTTGGGTAGTTTGTTCAGAGGTTGTTGTGACAACCACTAGCTTGTGGGGAATGGAAGGCATTTTTTGTGGTGAATAAAATGCAGGTAGAAAGTTTATGACCCTCCATTTCTCTCTCTTAGGGTTGGTTTGGTACACTTAAAAATGCTGAATGAAAAATTAAGGGAAGTATGACAAACTTGTCACGAACCCCGTTTTTCAAGGGCGTGCCTAACTAACTATTGAATTTTTTATACAAAATAATTT 2042 0.4001 MPENRQVLRNVDSTPSGDNIEGGADFSEAIRRLKMNDNWDRDAAAQSTQFPDRPGEPECLYYLRTGMCGYGSNCRYHHPAHISIGTHYGEELPQRVGQPDCEYFLKTGTCKYGSTCKYHHPKDRRGAAPVSFNTLGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPQHASFGAYPLAGSPTSNIIPTSGLPYAGGFPAWSVPRMSYLSGQGLQSYVPPFLSSSQGIIPVQSWNNYMGSMNPAMPTGFLGSNLVYDFMNLGESLFGAQAMNSPLPNRPDQPECRYFMSTGTCKYGTDCKFHHPKERISQSLINPLGLPVRPGQAVCSYYRIYGMCKFGPTCKFDHPVLTIPQNYGLTSPAMSVLDAPLISSNPRGLSTVQPSETSPSKLSNDNKLQNSDAKATTDDSSKQADTTSNSFPATSEPLHD 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00987 426 ProSiteProfiles Zinc finger C3H1-type profile. 319 347 IPR000571 GO:0046872
Pste8g00987 426 SUPERFAMILY CCCH zinc finger 99 124 IPR036855 GO:0046872
Pste8g00987 426 Gene3D - 91 174 - -
Pste8g00987 426 Gene3D - 274 354 - -
Pste8g00987 426 Gene3D - 43 87 - -
Pste8g00987 426 SUPERFAMILY CCCH zinc finger 280 305 IPR036855 GO:0046872
Pste8g00987 426 ProSiteProfiles Zinc finger C3H1-type profile. 140 168 IPR000571 GO:0046872
Pste8g00987 426 PANTHER PROTEIN PHOSPHATASE RELATED 37 379 - -
Pste8g00987 426 MobiDBLite consensus disorder prediction 1 24 - -
Pste8g00987 426 MobiDBLite consensus disorder prediction 371 426 - -
Pste8g00987 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 98 122 IPR000571 GO:0046872
Pste8g00987 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 278 303 IPR000571 GO:0046872
Pste8g00987 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 144 167 IPR000571 GO:0046872
Pste8g00987 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 55 79 IPR000571 GO:0046872
Pste8g00987 426 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 321 345 IPR000571 GO:0046872
Pste8g00987 426 SUPERFAMILY CCCH zinc finger 317 345 IPR036855 GO:0046872
Pste8g00987 426 ProSiteProfiles Zinc finger C3H1-type profile. 53 81 IPR000571 GO:0046872
Pste8g00987 426 SUPERFAMILY CCCH zinc finger 58 80 IPR036855 GO:0046872
Pste8g00987 426 ProSiteProfiles Zinc finger C3H1-type profile. 276 304 IPR000571 GO:0046872
Pste8g00987 426 SUPERFAMILY CCCH zinc finger 139 168 IPR036855 GO:0046872
Pste8g00987 426 ProSiteProfiles Zinc finger C3H1-type profile. 95 123 IPR000571 GO:0046872
Pste8g00987 426 SMART c3hfinal6 319 346 IPR000571 GO:0046872
Pste8g00987 426 SMART c3hfinal6 95 122 IPR000571 GO:0046872
Pste8g00987 426 SMART c3hfinal6 53 80 IPR000571 GO:0046872
Pste8g00987 426 SMART c3hfinal6 142 167 IPR000571 GO:0046872
Pste8g00987 426 SMART c3hfinal6 276 303 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00987 Pste-Chr8 5172818 5177450 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00987 1 356 C3H Transcription Factor Family AT1G04990 49.728 5.11e-115 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pste8g00987 zf-CCCH 4.2e-07 CL0537