Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00980 ATGGTTGAAAATATGAAGAGAAGCAGATTCGAAGTGTTGGGAATGTGTTGTGCTACAGAAGCAGCACTGGTTGAAAGAATTGTGAAGCCTCTTCATGGTGTCAAAGATGTCTCAGTGATAGTCCCTACCCGAACAGTCACTGTGGTCCATGATATTCTCTTGATTTCTGAGTCACAAATAGCTGATGCACTGAATGCTGCAAGGCTTGATGCTAGCTTGAGACTACAAGGAGAGATTGATAATGAAAAGAAATGGCCAGATTTACCTACGATGCTGTGTGGCTTGCTATTGACACTTTCTTTCTTGAAGTATATATATCACCCTTTGGAATGGTTGGCACTTGGTTCTGTTGTCATTGGCTTCCCTAAAGTTCTTCTCAGGGCCATAGCTTCAATTAAGGCTCTTACTCTTAATATCAACATTCTGGTTGTATTGGCAGTGTGCGGTACTGTTGCTTTACAAGATTTTTGGGAGGCAGGAATCATAATCTTCCTATTCTCCATTGCTCAATGGCTTGAGACAAGAGCAACTCACAAGGCAATGGTTGCAATGTCCTCTTTAACAAGCATGGGTCCTCAAAAGGCTGTTATTGCTGAAACTGGGGAACGTATTGACAACAACGATGTTAAGATCAGCACCATACTTGCGGTCAAGGCTGGAGAAGCTATTCCCCTTGATGGAATTGTGGTGGAAGGAAAGTGTGAAGTTGATGAAAAGATGTTAACAGGAGAATCATTGCCAGTGATCAAAGAGTTAGACTCAGTAGTATGGGCTGGAACTATTAATGTGAATGGATATATAAGTGTAAAAACTACTGTGTTGGCAAAAGACACAATGATGGCTAGAATGTCAAAACTGGTTGAAGAGGCTTCTAGCAGAAAATCTCGAACACAAAGATTCATAGATAATTTTGCAAAGTACTACATTCCTGCTGTTGTGTTGATTTCAGCTAGTATTGCCGTGGCTCCTGCTGCATTAAAAGTTACTGATATTAAGCCTTGGTTTCATCTGGCTATTGTGTTTTTATTGAGTGCATGCCCTTGTGCTCTCATCCTCTCCACACCTGTTGCAATTTTTTGTGCTCTCACAAAAGCTGCAATGAGTGGATTACTACTGAAAGGGGGAGATTATATTGAAACACTTTCTGGAATTAAGACTGTGGCTTTTGATAAAACGGGCACAATAACAAGAGGAGAGTTCACTGTGACTGATTTTTCTGTTTTAGATGACACTAGCATTGAAACTTTATTGTACTGGGTTTCAAGTGTTGAGAGTAAATCTAGTCATCCTATGGCAGCTGCACTAGTGGAATATGGAATGTCACATTCTATCAACCCAATCCCTGAAAATGTGGACAACTTTCAAATTTTTCCGGGGGAAGGAGTTTTTGGCACAATTGATGGGAAGGATATTTATGTAGGGAATAGAAGAATTGTTGACTGTCATATGCAATTTCAAAGCCATGAAATTTCAACCTTGAAACAATACTGTGAACCTACTCTGGTTGGAGTCTTCAGCTTAGCTGATTCTTGCAGATCAGGTGTTTTGGAGGCAATAGAAGAGCTAAATTTGTTAGGTGTGAGATCAGTCATGCTAACAGGAGATAGCACTCAAGCTGCTATGTATGTTCAGAGTCAGTTAAACCATGCTCTAGACATTGTTCATGCAGAGCTTCTACCAGCAGAAAAGGCTGTGATCATTGAAAATTTCAAGAAAGATGGTCTAACCGCCATGATTGGGGATGGGATAAATGATGCTTCTGCATTAGCCTCATCTGACATTGGTATCTCAATGGGAATATCTGGTTCAGCTCTTGCAAATGAGACAGGAAATGCAATTCTCATGTCAAATGATATCAGAAAAATACCTGAAGCCATTCGTCTGGCCAGAAAAACTACAAGAAAACTCGTTGAAAATGTCATTATTTCAATTGGCTTCAAGAGTGTCATACTTGCATTGGCAATTGCTGGACACCCTATAGTTTGGCTTGCTGTGTTGACTGATGTTGGGACCTGTTTACTTGTGATTCTCAATAGCATGTTAATTTTACAAGACAAACCCAAATATGAAAGAAAATCTACAAGTTCTAAGTATGGCACCTTTTTGGAAGATAAGACCATAACTCTACTTGACAAGAAAAGTAATGTCAATGAGAAGGAAGCACTTCTTACTCCTGAAAAGTGTGGTAAAGATTGTTGTAAGAAGGACACTTATTGTGCAGAAACTGCAAGCAAGAATGAATCTTCTGGACTTAAAAAATTGAGCTCACTAAAAGGAAGCCACTATGGAAACATGGTGTCTATTGAAGTTCATATAGTGAAACCTTTCGATGGTTGTTGTCTAAACAAAGACAAAATGTGTGAGGACTCCTCATGTAGAACAAAAAATAGTTCTGATTTTTGCCTAGAGCAATCCAAGACTGAAAACTGTGGCACTGGTTCTTGTTGTGACACAAGAAGCCAGCATTGCCACTTTTGAGTTTGATGGTTGAGGAGATTTCAGAGTTGGATGGGACAAGTGGAATTTCCAAGTGCTGCAAGAACTCATGCTGTAATGATAGACTAGTGTTGAC 2572 0.3974 MVENMKRSRFEVLGMCCATEAALVERIVKPLHGVKDVSVIVPTRTVTVVHDILLISESQIADALNAARLDASLRLQGEIDNEKKWPDLPTMLCGLLLTLSFLKYIYHPLEWLALGSVVIGFPKVLLRAIASIKALTLNINILVVLAVCGTVALQDFWEAGIIIFLFSIAQWLETRATHKAMVAMSSLTSMGPQKAVIAETGERIDNNDVKISTILAVKAGEAIPLDGIVVEGKCEVDEKMLTGESLPVIKELDSVVWAGTINVNGYISVKTTVLAKDTMMARMSKLVEEASSRKSRTQRFIDNFAKYYIPAVVLISASIAVAPAALKVTDIKPWFHLAIVFLLSACPCALILSTPVAIFCALTKAAMSGLLLKGGDYIETLSGIKTVAFDKTGTITRGEFTVTDFSVLDDTSIETLLYWVSSVESKSSHPMAAALVEYGMSHSINPIPENVDNFQIFPGEGVFGTIDGKDIYVGNRRIVDCHMQFQSHEISTLKQYCEPTLVGVFSLADSCRSGVLEAIEELNLLGVRSVMLTGDSTQAAMYVQSQLNHALDIVHAELLPAEKAVIIENFKKDGLTAMIGDGINDASALASSDIGISMGISGSALANETGNAILMSNDIRKIPEAIRLARKTTRKLVENVIISIGFKSVILALAIAGHPIVWLAVLTDVGTCLLVILNSMLILQDKPKYERKSTSSKYGTFLEDKTITLLDKKSNVNEKEALLTPEKCGKDCCKKDTYCAETASKNESSGLKKLSSLKGSHYGNMVSIEVHIVKPFDGCCLNKDKMCEDSSCRTKNSSDFCLEQSKTENCGTGSCCDTRSQHCHF 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00980 825 SUPERFAMILY HMA, heavy metal-associated domain 3 73 IPR036163 GO:0046872
Pste8g00980 825 Pfam haloacid dehalogenase-like hydrolase 384 593 - -
Pste8g00980 825 NCBIfam heavy metal translocating P-type ATPase 139 681 IPR027256 GO:0006812|GO:0016020|GO:0019829
Pste8g00980 825 FunFam Copper-transporting ATPase 1, putative 177 291 - -
Pste8g00980 825 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 3 686 - -
Pste8g00980 825 SUPERFAMILY HAD-like 386 680 IPR036412 -
Pste8g00980 825 SFLD Haloacid Dehalogenase 371 632 - -
Pste8g00980 825 Pfam E1-E2 ATPase 198 366 - -
Pste8g00980 825 SUPERFAMILY Calcium ATPase, transmembrane domain M 139 382 IPR023298 -
Pste8g00980 825 Gene3D - 177 291 - -
Pste8g00980 825 NCBIfam HAD-IC family P-type ATPase 162 657 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Pste8g00980 825 CDD HMA 10 72 IPR006121 GO:0046872
Pste8g00980 825 Gene3D - 1 75 - -
Pste8g00980 825 SUPERFAMILY Calcium ATPase, transduction domain A 202 287 IPR008250 -
Pste8g00980 825 PRINTS P-type cation-transporting ATPase superfamily signature 237 251 - -
Pste8g00980 825 PRINTS P-type cation-transporting ATPase superfamily signature 388 402 - -
Pste8g00980 825 PRINTS P-type cation-transporting ATPase superfamily signature 579 598 - -
Pste8g00980 825 PRINTS P-type cation-transporting ATPase superfamily signature 503 514 - -
Pste8g00980 825 PRINTS P-type cation-transporting ATPase superfamily signature 525 535 - -
Pste8g00980 825 PRINTS P-type cation-transporting ATPase superfamily signature 603 615 - -
Pste8g00980 825 FunFam Putative cadmium/zinc-transporting ATPase 3 399 511 - -
Pste8g00980 825 ProSitePatterns E1-E2 ATPases phosphorylation site. 390 396 IPR018303 -
Pste8g00980 825 Gene3D - 399 511 IPR023299 GO:0000166
Pste8g00980 825 NCBIfam cadmium family heavy metal-translocating P-type ATPase 139 683 - -
Pste8g00980 825 Gene3D - 379 630 IPR023214 -
Pste8g00980 825 FunFam Putative cadmium/zinc-transporting ATPase 3 2 75 - -
Pste8g00980 825 ProSiteProfiles Heavy-metal-associated domain profile. 6 72 IPR006121 GO:0046872
Pste8g00980 825 Pfam Heavy-metal-associated domain 10 63 IPR006121 GO:0046872
Pste8g00980 825 CDD P-type_ATPase_HM 94 681 - -
Pste8g00980 825 SFLD p-type atpase 371 632 IPR044492 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00980 Pste-Chr8 5132196 5138496 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00980 3 824 Primary Pumps ATPases AT4G30110 51.643 0.0 848