LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pste8g00967	CATTTTTTGATATCATTTTCTTCATTCTCCACCAAGAAGCAACAAGCTCTTCTCTTCTCTTCTCTTTTCTTCTTCTTCTAAAGAAGAGAAAAGCATCCGCAACAAAACATGGGTTCGGGTGCTTTCTTTGCTTATTCTCTCGATATCTTCAATGCAAGGGCAGAGAGGTACAATTGGTTCGTTGCAAGAAACCATAGAATTTGATTGTGGGTCTACATCAAGTGCTGCAACAGTTGATCAGCATATTTTCTGCAATAATATGCGGAATCCTGCAGGAAATCAGTATGTACATTCACCCAGTGATATAAACTCGTCTTACGTGAATCCTATAAACCAAGAGTGGCAGAACTTCAGTGAATGGAGCTTAGGTGAGCCAAGTTCCAGTAATACACAGAATAAGGTTACCAGCAATGAGCAGAAAAGAGAGCGAGGATTATCATCTTCCATAAGTTCTGGTGCTGTAGCTGGTCCAAGACTTGAAGAAAGAAACTTTGAACCAAACTGTCCAAACAACAATTTTTCATTGGACAACGTCAATACAGGTCCCATGTATATGCACAGCTCCAATTCTCATCTGGCGCCACAAAATCTCAATCTGAATGCAAGTTTAGGAGATAGTGGCAATGATACTTGCTGTCATGTGGAACATCCTCCTAACTTGAACAAGTCTAGTGGACCGGTAGATGAGCATATTCCACCTACAGTTGGTTCTGGTTCTTTTCTGCTTCCTTCTGGAACTAATGGCTTTTTAGTTGAGGATGCTGATGGTAGGCCAGGTTGCTCTCTAGACACCCGCCGTGTATCCTGTAAAAGAAAGGCTGTTGAACCAAATATTGGACAATCTTCAGACAGTGGTAGTTCTAGCTATAGTCAGCATATGGATGGTAGGACTTGGAACACTCTTCCTACACAGGATTATGGAGGGAGCAGTTTTATAAGATCTGCTCCAACCGAACAAGTAAACGCACGACTTGGCCTGAGTACCGGGGTTGGAGTCTCTGAAAGCCTTCCTGAGTCAAATGTTTCAGGTGGCTCCGAAGGCTTCCACAGAAATTTTCGTTTGAGGATAAATCCTTCAAGTCAACAAATTTCCGTTGCTCCTGCCACAATCTCAAGTGGGAATGTTATTGGGAATTCTGGTGTTTCTTCACCCTCTCCAATATTGCAACAATTTCATCCTGTTGATAATTCTTTGGACGTGAGATCAGTACCACCTGTAGATACTATGGTTCCTCAAAGCCAGCCCCTGGTAATTCATGTTCCTGCCATGCCAAGGAATGTGCAGCCATTCAGGTGGAGTGGTGGTTCTAGCTCAACGAACAATCATTCATCAAACTTAGTTATATCTGCAGATAGAAGTAATCTACCAGGCGAGGAAGCAAGCTCAAGAAGTGCACCTAGAAACATTATAGAATACCCAATGTTTTTGCCTGCAACTAATTCAAGAAATGTGGCTCGAAATCCGAAATGTTGGTTCTTCATCGCGGGTGGGTCAAATGCTGCTGTTAATCCATCATCTGCCTCAGCTCGGGTTTCTCGCCCTAATCCTCAGCAGCATCCACGCAGGTTATCTGAATTTGTTCGCCGGTCCTTGTTTTCTCCTGGTTTGGAGGCTGCTGGGAGCTCAAGCAATAGTTATTCTTCCTTTCGAGGCCCTTCGGCTTCATCTGAATCAAGGATACTGTCATCTGGCGTAAATCCATTCGAGTGTCCAGGTGATAGTGAATTTGGAATTCCGTATTCATTACGATCTTTGGATCTTGCTGGTGAAGGAAGTGGTAGACTTGTATCTGAGCTCCGCAATGTGTTGGGCCTCAGGCGTAGGGGTGGGAACCTGCGATTTGAGGATGTTATGATCCTCGACCATTCAGTGTTCTCTGGAATTGCTGATATTCATGATCGGCACAGGGATATGCGACTTGATGTTGATAACATGTCTTATGAGGAGCTATTGGCTCTGGAAGAACGCATTGGAAATGTGAGCACTGGATTGAATGAGGAGATCATATTGAAACATTTGAAAAAGAAGAAGTATTCATCTGGACTAGGCTCTCAGCAAGTGGCAGAACCCTGCTGTGTGTGTCAGGAGGAGTATAAAGATGGAGATGATATAGGATCACTGGATTGTGGGCATGATTACCATTCCGACTGTATTAAACAGTGGCTAATGCATAAGAATTTGTGTCCCATTTGTAAGACAACTGGCTTGGCAACATGAGGCTTGTATCAAAATATTCTATCAGGGAAAGTGGCAACAATTAATCAGAAAATTTTGGTGAATTGTAGCTGAAGTCTCTGGTGCTTTGCTGCTTGCTGAATGGCCCGTCTTCTTAAGCCTTAGGCAAATTTCTTCTTGTCATTTTTTTGTTTATTTGTAGAAGCCAATGATCTCCAGTTAAAGTGACATATGAGATGATTGGTGTGGATAAAGGAAAATTTCTTAACTGTAGTGGATAAGGCTTGTTTTATATTTATGGATTTTTTTATACATTGCTCATATTATTTTGGTCTTGGTCGGTTTATGATGTGATTGATTTTGGGTTATACTGGATCATGATGTGATTGATTTTGGGTTATACTGGAT	2584	0.4218	MQGQRGTIGSLQETIEFDCGSTSSAATVDQHIFCNNMRNPAGNQYVHSPSDINSSYVNPINQEWQNFSEWSLGEPSSSNTQNKVTSNEQKRERGLSSSISSGAVAGPRLEERNFEPNCPNNNFSLDNVNTGPMYMHSSNSHLAPQNLNLNASLGDSGNDTCCHVEHPPNLNKSSGPVDEHIPPTVGSGSFLLPSGTNGFLVEDADGRPGCSLDTRRVSCKRKAVEPNIGQSSDSGSSSYSQHMDGRTWNTLPTQDYGGSSFIRSAPTEQVNARLGLSTGVGVSESLPESNVSGGSEGFHRNFRLRINPSSQQISVAPATISSGNVIGNSGVSSPSPILQQFHPVDNSLDVRSVPPVDTMVPQSQPLVIHVPAMPRNVQPFRWSGGSSSTNNHSSNLVISADRSNLPGEEASSRSAPRNIIEYPMFLPATNSRNVARNPKCWFFIAGGSNAAVNPSSASARVSRPNPQQHPRRLSEFVRRSLFSPGLEAAGSSSNSYSSFRGPSASSESRILSSGVNPFECPGDSEFGIPYSLRSLDLAGEGSGRLVSELRNVLGLRRRGGNLRFEDVMILDHSVFSGIADIHDRHRDMRLDVDNMSYEELLALEERIGNVSTGLNEEIILKHLKKKKYSSGLGSQQVAEPCCVCQEEYKDGDDIGSLDCGHDYHSDCIKQWLMHKNLCPICKTTGLAT	688

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pste8g00967	688	FunFam	E3 ubiquitin-protein ligase MBR2	609	686	-	-
	Pste8g00967	688	MobiDBLite	consensus disorder prediction	223	245	-	-
	Pste8g00967	688	Pfam	Ring finger domain	641	682	IPR001841	-
	Pste8g00967	688	SUPERFAMILY	RING/U-box	640	684	-	-
	Pste8g00967	688	MobiDBLite	consensus disorder prediction	454	469	-	-
	Pste8g00967	688	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	605	685	IPR013083	-
	Pste8g00967	688	SMART	ring_2	641	681	IPR001841	-
	Pste8g00967	688	MobiDBLite	consensus disorder prediction	70	103	-	-
	Pste8g00967	688	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RNF165	215	686	IPR045191	GO:0061630
	Pste8g00967	688	ProSiteProfiles	Zinc finger RING-type profile.	641	682	IPR001841	-
	Pste8g00967	688	MobiDBLite	consensus disorder prediction	70	107	-	-
	Pste8g00967	688	MobiDBLite	consensus disorder prediction	454	473	-	-
	Pste8g00967	688	MobiDBLite	consensus disorder prediction	225	245	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pste8g00967	Pste-Chr8	5027552	5033510	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pste8g00967	1	688	C3H Transcription Factor Family	AT2G15530	31.186	7.79e-74	250