Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00942 TTAGATGTTTACATCCATGATTATCTAGTGAAGCGGGATTTGAAGGCTTCAGCGCAGGCTTTTCAAGCTGAAGGGAAAGTGTCCTCGGACCCTGTTGCTATTGATGCACCTGGAGGATTTCTGTTTGAGTGGTGGTCGGTTTTCTGGGACATATTTATTGCCAGGACTAATGAGAAGCACTCAGAGGTTGCTGCATCTTATATTGAGACCCAGTTAATTAAGGCTAGAGAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCCACAACCTCAGCAGTCACAGCATCAACAGCAGCAGCAGCAACAACAACACATACAGATGCAACAAATGCTGTTACAGAGGGCTCAGCAGCAGCAGCAACAACAACAACAGCAGCAGCAACAACCACAACAGCAGCAGCAACAGCAACCACAGCCGCAACATCAGCAGCCACCGCCACAGCAACAGCAGGGAAGGGATAGGGCTCATCTCTTAAATGGTGGTACAAATGGTTTAGTTGGAAACTCTAGCACTGCAAATGCACTAGCAACAAAGATGTATGAGGAAAGATTAAAGCTCCCCCTTCAAAGGGACTCTTTGGAAGATGCTGCAATGAAGCAAAGATTTGGAGACCAACTCTTGGACCCAAATCATGCCTCAATATTGAAGTCATCTGCAGCCTCCGGTCAGCCTTCAGGGCAAGTTTTGCATGGTACTGCTGGTGCAATCTCTCCACAAGTTCAAGCTCGTAGTCAGCAATTACCAGGGTCTACTCCGGACATAAAAAGTGAGATCAATCCTGTCTTAAATCCCAGAGCTGCGGGTCCTGAAGGATCGTTGATAGCAATGCCTGGTTCTAATCAAGGTAGCAACAATTTGACTCTAAAAGGGTGGCCACTCACTGGCTTGGATCAACTACGTTCTGGTCTACTCCAGCAACAGAAACCACCTTTCATGCAGTCTCCTCAGCCTTTTCATCAACTTCCAATGTTGACACCACAGCATCAGCAGCAGCTAATGATTGCGCAACAGAATTTGGCATCACCATCTGCCAGTGATGATAATAGAAGACTCAGAATGCTGCTGAGTAATAGGAATATGAGTGTAACTAAGGATGGTCTTTCAAACCCTGTTGGTGATGTGGTATCAAATGTTGGATCTCCTCTTCAAGCAGGTGGCCCTGGTTTTGCGCGTAGTGATACTGATATGCTAATGAAGTTAAAACTGGCACAATTGCACCAACATCAACAGCAGTCAAATGCCAATCCACAACAGCAGCAACTGCAGCAGCATACTCTTTCAAATCAGCAATCCCAGACTTCAAATCATAGCATGCATCAGCAAGATAAAATGGGGGGAGGTGGTGGTAGTGTCAATGTGGATGGTAGCATGTCAAACTCGTTTAGAGGCAATGATCAGGTTTCCAAAAACCAGACTGGGAGAAAGAGAAAACAGCCTGCATCTTCTGGTCCAGCCAATAGTTCTGGAACGGCCAATACAGCTGGTCCATCTCCAAGTTCAGCACCCTCAACTCCTTCAACACACACACCTGGTGATGTAATGTCAATGCCTGCTTTACCTCATAGTGGTAGTTCTTCAAAGCCATTAATGATGTTTGGCACTGATGGTGCTGGAACGCTAACATCACCTTCAAACCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGATGTGGACCGTTTTGTGGAGGATGGATCTCTTGATGATAATGTCGAGTCTTTTTTATCCCATGATGATACAGACCCTAGAGATACTGTTGGTTTTACGTTTTCTGAAATAAACTCTATACGTGCAAGCACCAACAAAGTTGTCTGTTGCCATTTCTCATCTGATGGCAAATTACTTGCTAGTGGTGGCCATGACAAAAAGGCTGTTTTATGGTTCACAGATTCTCTAAAACAGAAAGCTACTCTTGAAGAGCATGCATCTTTAATCACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTCTTGCAACATCTTCATATGACAAAACTGTCAGGGTGTGGGATGTTGAAAATCCTGGATATTCGCTTCGTACCTTTACGGGACATTCTTCATCTGTGATGTCACTAGATTTTCACCCAAATAAAGATGATCTTATCTGCTCTTGTGATGTTGATGGCGAGATACGATATTGGAGCATTAACAAGGGCAGTTGTGCTAGAGTCTCAAAGGGTGGCACGGCTCAGATGAGATTCCAACCTCGTCTAGGGAGGTACCTAGCTGCAGCTGCAGAGAATGTTGTTTCTATACTTGATGTGGAAACGCAAGCATGTCGATATTCACTAAAGGGACATACAAAATCTATACATTCTGTATGTTGGGATCCTTCTGGGGAGTTCTTGGCATCTGTCAGTGAGGACTCTGTTAGGGTTTGGACTCTTGGATCAGGGAGTGAAGGGGAGTGTGTTCATGAGCTTAGCTGTAATGGCAATAAGTTTCACTCATGTGTTTTCCACCCAACGTATTCTTCGCTGTTGTCATTGGACCTCTGGAACATGACTGAGAACAAGACAATGACTCTGGCTGCACATGAAGGTCTTATCGCTGCTTTGGCGGTTTCTACTGTAAATGGTTTGGTTGCTTCAGCCAGTCATGACAAATTTGTCAAGCTCTGGAAGTGATTTGGTTGTCATTAATACACAAGTTGTTTTTATCATTGTTGATAATGTTTCTAGATTATGTTCCCTTTTTTATAGTTTGATAATTTAAACTTCATAACTTGTTTTAGTTTATGTTCCCTTTTATTAGCTTAGCTTGATCAATCACCCTTCTCCTCCCCCTCTTTTGCCATTTGGTATAATCTGATTCTGTGTAACAATAGATAGCAACTTTTGCAATATTTTCGTTCCTGTTGTATACTTTTTCATTCTTGTTATACTTTGAGATTTTTGTTCTTGAGTAATCCAGATTGACTAGTATAACTGAGTGTTAGCAACACAACAC 2956 0.4367 LDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQQPQPQQSQHQQQQQQQQHIQMQQMLLQRAQQQQQQQQQQQQQPQQQQQQQPQPQHQQPPPQQQQGRDRAHLLNGGTNGLVGNSSTANALATKMYEERLKLPLQRDSLEDAAMKQRFGDQLLDPNHASILKSSAASGQPSGQVLHGTAGAISPQVQARSQQLPGSTPDIKSEINPVLNPRAAGPEGSLIAMPGSNQGSNNLTLKGWPLTGLDQLRSGLLQQQKPPFMQSPQPFHQLPMLTPQHQQQLMIAQQNLASPSASDDNRRLRMLLSNRNMSVTKDGLSNPVGDVVSNVGSPLQAGGPGFARSDTDMLMKLKLAQLHQHQQQSNANPQQQQLQQHTLSNQQSQTSNHSMHQQDKMGGGGGSVNVDGSMSNSFRGNDQVSKNQTGRKRKQPASSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVMSMPALPHSGSSSKPLMMFGTDGAGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDDNVESFLSHDDTDPRDTVGFTFSEINSIRASTNKVVCCHFSSDGKLLASGGHDKKAVLWFTDSLKQKATLEEHASLITDVRFSPSMPRLATSSYDKTVRVWDVENPGYSLRTFTGHSSSVMSLDFHPNKDDLICSCDVDGEIRYWSINKGSCARVSKGGTAQMRFQPRLGRYLAAAAENVVSILDVETQACRYSLKGHTKSIHSVCWDPSGEFLASVSEDSVRVWTLGSGSEGECVHELSCNGNKFHSCVFHPTYSSLLSLDLWNMTENKTMTLAAHEGLIAALAVSTVNGLVASASHDKFVKLWK 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00942 877 ProSiteProfiles LIS1 homology (LisH) motif profile. 1 29 IPR006594 GO:0005515
Pste8g00942 877 Pfam LisH 1 25 IPR006594 GO:0005515
Pste8g00942 877 MobiDBLite consensus disorder prediction 147 171 - -
Pste8g00942 877 MobiDBLite consensus disorder prediction 407 443 - -
Pste8g00942 877 ProSiteProfiles Trp-Asp (WD) repeats profile. 641 676 IPR001680 GO:0005515
Pste8g00942 877 ProSitePatterns Trp-Asp (WD) repeats signature. 660 674 IPR019775 -
Pste8g00942 877 MobiDBLite consensus disorder prediction 454 513 - -
Pste8g00942 877 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 684 722 - -
Pste8g00942 877 Coils Coil 107 130 - -
Pste8g00942 877 Gene3D - 834 877 IPR015943 GO:0005515
Pste8g00942 877 Gene3D - 556 733 IPR015943 GO:0005515
Pste8g00942 877 SUPERFAMILY WD40 repeat-like 593 877 IPR036322 GO:0005515
Pste8g00942 877 MobiDBLite consensus disorder prediction 81 102 - -
Pste8g00942 877 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 845 877 - -
Pste8g00942 877 ProSiteProfiles Trp-Asp (WD) repeats profile. 766 806 IPR001680 GO:0005515
Pste8g00942 877 Pfam WD domain, G-beta repeat 762 796 IPR001680 GO:0005515
Pste8g00942 877 Pfam WD domain, G-beta repeat 600 630 IPR001680 GO:0005515
Pste8g00942 877 Pfam WD domain, G-beta repeat 680 717 IPR001680 GO:0005515
Pste8g00942 877 Pfam WD domain, G-beta repeat 638 673 IPR001680 GO:0005515
Pste8g00942 877 MobiDBLite consensus disorder prediction 122 171 - -
Pste8g00942 877 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 641 676 - -
Pste8g00942 877 Gene3D - 734 833 IPR015943 GO:0005515
Pste8g00942 877 SMART WD40_4 592 631 IPR001680 GO:0005515
Pste8g00942 877 SMART WD40_4 838 877 IPR001680 GO:0005515
Pste8g00942 877 SMART WD40_4 759 797 IPR001680 GO:0005515
Pste8g00942 877 SMART WD40_4 634 673 IPR001680 GO:0005515
Pste8g00942 877 SMART WD40_4 677 717 IPR001680 GO:0005515
Pste8g00942 877 PANTHER TRANSCRIPTION ACTIVATOR MSS11 1 877 - -
Pste8g00942 877 ProSiteProfiles Trp-Asp (WD) repeats profile. 845 877 IPR001680 GO:0005515
Pste8g00942 877 ProSiteProfiles Trp-Asp (WD) repeats profile. 599 630 IPR001680 GO:0005515
Pste8g00942 877 MobiDBLite consensus disorder prediction 407 530 - -
Pste8g00942 877 MobiDBLite consensus disorder prediction 122 140 - -
Pste8g00942 877 CDD WD40 595 877 - -
Pste8g00942 877 ProSiteProfiles Trp-Asp (WD) repeats profile. 684 726 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00942 Pste-Chr8 4891295 4902942 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00942 678 876 Miscellaneous Gene Families AT5G08390 26.190 1.59e-13 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Pste8g00942 WD40 1.7e-05 CL0186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g00942 8 4891295 4902942 Pste2g01859 2 18981928 18989733 PCT