Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00871 TGGTTCCATGTTTTACTTCTCGTCCTAAGGACTGAAACGACACCGCTTTGGTCCTTTTGGTCTTTAAACCCTATCTCCCAATCTGACACTTCTGAGTATCTTCTTCTCTCTCGGAGCTGCAATCTCCACACTCCGCCGCCGCCACGAAAGGAGCGTCAGCTATACGACGATGACCACATCCTCAAGGCAAAGATCGATCTTTTGAACAATACCAATATGGTGGACTATGCTATGGACATCCACAAAAGCCTCTACCACACCGAGGATGTCCCACAGGACATGGTCGAGCGCAGGGTCGAGGTTGTTGCGCGGCTTAAGTCCCTTGAGGAGGGTGCCGCTCCCCTTGTGGCCTTCCTACAGAACGCTGCCGCCGTGCAGGAGCTCCGGGCTGATAAGCAGTATAATCTGCAGATGCTCAATGATAGATACCAGATTGGTCCTACACAAATAGAGGCATTGTACCAATATGCCAAATTTCAGTTTGAGTGCGGAAACTACTCTGGCGCTGCTGACTATCTTTATCAGTACAGAGCATTGTGCACAAACAGTGAAAGGAGTTTGAGTGCTTTGTGGGGGAAGCTGGCGGCTGAAATTTTGATGCAGAACTGGGATATTGCTCTTGAGGAGCTCAATCGTTTGAAGGAAATCATTGACTCGAAGAATTTTTCATCACCTTTGAATCAGGTCCAAAGCAGAATATGGCTGATGCATTGGAGTCTGTTCATCTTTTTTAACCATGACAATGGTAGAACACAGATAATTGATCTGTTCAATCAGGACAAGTATCTAAATGCTATCCAAACTAGTGCTCCTCACCTTTTACGATACTTGGCCACAGCATTCATTGTTAACAAGAGAAGGAGGCCTCAATTCAAAGATTTTATTAAAGTTATTCAACAAGAGCAACATTCATATAAGGACCCTATCACTGAGTTTTTGGCTTGTGTTTATGTCAACTATGACTTTGATGGGGCTCAAAAGAAGATGAGGGAATGTGAAGAAGTGATTCTAAATGATCCCTTCCTTGGCAAAAGAGTTGAAGAAAGCAACTTTTCAACAGTACCTCTAAGGGATGAGTTCCTTGAAAATGCTAGGCTATTTATCTTTGAGACATACTGTAGAATACACCAACGCATTGACATGGGAGTGCTTGCTGAAAAGTTAAATTTGAATTATGAGGAGGCTGAAAGATGGATTGTTAATCTGATCCGAAGTTCAAAGCTTGATGCCAAAATTGATTCTGAAACTGGAACAGTTATCATGGAACCGAATCATCCCAATGTGTATGAGCAACTGATAGAGCATACCAAACCCATTAATGGCGCACTTACAAGTTGGTCAGTCAACTTGTGGAACATGTTCAAACTCAAACAGCACGATAACTGTGTAGGTAGATAGCTGAGAGTTTTTGTTTTATCTTTCCGGATGCATCATTTTGTTTTTGGTTTTGTCTATTTTGGATTTAGAATTCAAATTTATGGGCTGTTATTGTATACCTCTTGAAGTAGCTTCTTCTGAAGTTACTTGTGGATCCAAACAAGTGGTAGTATTGAATATTACCATTTTGCTTAAAATGTTTAAACTTTCTGATTGATCACGCAGCTGCAGGCATATTTGATCTTCGTCGTCATATTTGATCTTCGTCGTCATGTTTTGGA 1658 0.4186 WFHVLLLVLRTETTPLWSFWSLNPISQSDTSEYLLLSRSCNLHTPPPPRKERQLYDDDHILKAKIDLLNNTNMVDYAMDIHKSLYHTEDVPQDMVERRVEVVARLKSLEEGAAPLVAFLQNAAAVQELRADKQYNLQMLNDRYQIGPTQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERSLSALWGKLAAEILMQNWDIALEELNRLKEIIDSKNFSSPLNQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLNAIQTSAPHLLRYLATAFIVNKRRRPQFKDFIKVIQQEQHSYKDPITEFLACVYVNYDFDGAQKKMRECEEVILNDPFLGKRVEESNFSTVPLRDEFLENARLFIFETYCRIHQRIDMGVLAEKLNLNYEEAERWIVNLIRSSKLDAKIDSETGTVIMEPNHPNVYEQLIEHTKPINGALTSWSVNLWNMFKLKQHDNCVGR 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00871 465 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 355 439 IPR000717 -
Pste8g00871 465 Pfam eIF3 subunit 6 N terminal domain 51 160 IPR019010 -
Pste8g00871 465 ProSiteProfiles PCI domain profile. 242 426 IPR000717 -
Pste8g00871 465 SMART eIF3_N_2 50 160 IPR019010 -
Pste8g00871 465 Hamap Eukaryotic translation initiation factor 3 subunit E [EIF3E]. 31 456 IPR016650 GO:0003743|GO:0005737|GO:0005852
Pste8g00871 465 FunFam Eukaryotic translation initiation factor 3 subunit E 251 453 - -
Pste8g00871 465 SUPERFAMILY "Winged helix" DNA-binding domain 355 426 IPR036390 -
Pste8g00871 465 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 50 442 IPR016650 GO:0003743|GO:0005737|GO:0005852
Pste8g00871 465 Gene3D - 251 448 - -
Pste8g00871 465 Pfam PCI domain 308 422 IPR000717 -
Pste8g00871 465 CDD eIF3E 50 437 IPR016650 GO:0003743|GO:0005737|GO:0005852
Pste8g00871 465 PIRSF Transl_init_eIF3e 49 461 IPR016650 GO:0003743|GO:0005737|GO:0005852
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00871 Pste-Chr8 4474096 4477956 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00871 50 441 Eukaryotic Initiation Factors Gene Family AT3G57290 88.010 0.0 728