Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00807 CTCACATCCAACTGAGGGCGCAATCGCATCGCTTTCGTCTCTCTTCAAACAAAACATATCAAAATCAGAAGACCCCCAAATCTCGAAACCCTAACCCTCACTGTCCACCGCCATGGCCAAGAAAAGAAAGCTTCGATCCTCCGACCCCGAACCAACCAAACCCGTGGAACCACAGCAACAAGAGCAAGAACCAGTGGAACTCGAACAACAGCAACCCAATCCGGACCCCACTCTCGAAGACCCCAACACCATGGCCATCGACGAAACAACACAAGAAGAAGAGCAGCAACATCTGCAAAACACTGAAGGCGAAGAAGATGAAACGGAGGAGCAGCAAGAGCAAGAACCAGAAACCCTAGAGGAGCAACAGGAGCAGGAAACCCTAGAATCTGCAAACCACACAGAGGCGAATGGTGCTGATGAAGGAAACAATGAAGAAGAGGAAGAAGACCTTACTCTGGAAGAAGAGCCCGTGGAGAAGCTTCTTGAACCCTTCACGAAGGAGCAGTTGCACTCTCTCGTCAAGCAGGCCGTTGAGAAGTTCCCCGAATTCGTGGATAGCATCCGCCAGCTTGCTGATGTTGACCCTGCGCACCGGAAAATCTTTGTCCACGGCCTCGGCTGGGACGCCACCGCGGAAACCCTAACGGCTGTGTTCGGCAAATACGGCGAGATCGAGGACTGCAAGGCCGTCACCGACAAAGTTTCTGGCAAATCGAAAGGTTATGCTTTCATTTTGTTCAAGCACAGGGATGATGCTCGCAAGGCGCTGAAACATCCTCAGAAGAAGATCGGGAATCGCACTACATCGTGCCAGCTGGCCTCTGCGGGTCCTGTTCCGGCACCACCGCCAAATGCGACTCCCGTTTCGGAGTACACCCAAAGGAAGATCTTCGTAAGCAATGTGAGTGCGGAGATTGATCCTCAGAAGTTGCTTGAATTCTTCAAGCAGTTTGGGGAGGTTGAGGATGGTCCTCTTGGTTTAGATAAAAACACTGGGAAACCTAAGGGTTTTGCTCTGTTTGTGTACAAGTCTGTGGAGAGTGCTAAGAAGGCTTTGGAAGAGCCTCATAAGAACTTTGAGGGGCATACTTTGTATTGTCAGAAGGCTGTCGATGGTCCTAAGGGGAACAAGGGGTACCATCAGTATCATCATCAGCCGCATTCTCACCATCACCATCACCATCACCAGCCTCATTATCAAAGAAAGGAGAAGAACAAGTATTCCTCTGGTGGTGGTGGTGGTGGTGGACCGTCTCATGGTAGTGGTCATTTGATGGCGCCCTCAGCCTCTGCTGTGGGTGGTTTCAATCCGGGTGTGCCAGCGCAAGGGTTGAATCCGGCACTGGGACAGGCTTTGACTGCGTTGCTGACTAATCAGGGAGCTGGATTGGGGCTTGGGAATCTGCTTGGAGGGCTTGGTGGTGCTCCGGTTAATCAGGCGGCTCCACCTGCTCCCTATGGGAATCAGCCTGCCATGGGGTATGGAAGCCAGCCAGCAATGCAACCGGGATACCAGAATCCCCAAATGGGGCAAAGCAATGCTGTCAGACCTCATCCTGGCGGTGGCGGCGCACCTTACATGGGTCACTAG 1594 0.5245 MAKKRKLRSSDPEPTKPVEPQQQEQEPVELEQQQPNPDPTLEDPNTMAIDETTQEEEQQHLQNTEGEEDETEEQQEQEPETLEEQQEQETLESANHTEANGADEGNNEEEEEDLTLEEEPVEKLLEPFTKEQLHSLVKQAVEKFPEFVDSIRQLADVDPAHRKIFVHGLGWDATAETLTAVFGKYGEIEDCKAVTDKVSGKSKGYAFILFKHRDDARKALKHPQKKIGNRTTSCQLASAGPVPAPPPNATPVSEYTQRKIFVSNVSAEIDPQKLLEFFKQFGEVEDGPLGLDKNTGKPKGFALFVYKSVESAKKALEEPHKNFEGHTLYCQKAVDGPKGNKGYHQYHHQPHSHHHHHHHQPHYQRKEKNKYSSGGGGGGGPSHGSGHLMAPSASAVGGFNPGVPAQGLNPALGQALTALLTNQGAGLGLGNLLGGLGGAPVNQAAPPAPYGNQPAMGYGSQPAMQPGYQNPQMGQSNAVRPHPGGGGAPYMGH 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00807 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 258 336 IPR000504 GO:0003723
Pste8g00807 493 MobiDBLite consensus disorder prediction 338 393 - -
Pste8g00807 493 MobiDBLite consensus disorder prediction 15 52 - -
Pste8g00807 493 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 162 239 IPR000504 GO:0003723
Pste8g00807 493 Gene3D - 248 387 IPR012677 -
Pste8g00807 493 MobiDBLite consensus disorder prediction 472 493 - -
Pste8g00807 493 SUPERFAMILY RNA-binding domain, RBD 150 242 IPR035979 GO:0003676
Pste8g00807 493 MobiDBLite consensus disorder prediction 66 87 - -
Pste8g00807 493 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 70 344 - -
Pste8g00807 493 MobiDBLite consensus disorder prediction 344 365 - -
Pste8g00807 493 Gene3D - 45 243 IPR012677 -
Pste8g00807 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 260 328 IPR000504 GO:0003723
Pste8g00807 493 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 164 231 IPR000504 GO:0003723
Pste8g00807 493 MobiDBLite consensus disorder prediction 1 117 - -
Pste8g00807 493 SMART rrm1_1 259 331 IPR000504 GO:0003723
Pste8g00807 493 SMART rrm1_1 163 235 IPR000504 GO:0003723
Pste8g00807 493 SUPERFAMILY RNA-binding domain, RBD 242 356 IPR035979 GO:0003676
Pste8g00807 493 Coils Coil 54 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00807 Pste-Chr8 4179754 4181347 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00807 254 337 C2H2 Transcription Factor Family AT2G19380 29.762 3.15e-09 57.4