Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00787 ATGGAGTGTGAAGAGAACAGTGATGATGATAAGGGAAGTGGTGTTTTAAAGAAAGGGCCATGGACGGCGGAAGAAGATGCAATATTAGCAGCATATGTGATGAAGAAGGGTGTCGGAAATTGGAACGCAGTGCGAAACAACACTGGATTAGCTCGCTGTGGAAAAAGTTGTCGTCTACGATGGACTAATCATCTTCGACCAGATTTAAAAAGAGGTGTTTTCTCCCATCAAGAACAGTCAAAAATAATTCACCTTCACTCTTTAATGGGAAATAAATGGGCCAGAATGGCTCAAGAGTTGCCTGGACGCACAGACAACGAAATAAAGAACTTTTGGAATACAAGACAAAAGAAAATGAAACGAGCTGGCTTACCACTCTACCCCGATGACGTAAAACCATCAGAAATCAATGTAGATGATATGGAAGCAGGTACATCATGTAAAATACCACAACTTGTATTCAACAGTTACCACCAAATGGGTGAATTGTGTACATCACCAATTCCTGAGGTACCCCAAGACACCACCTTTGAAGACCAAGATTCAAATCTGCTGCCTTATATTTCAGCAGCACCAGTTGATCAGTGA 588 0.415 MECEENSDDDKGSGVLKKGPWTAEEDAILAAYVMKKGVGNWNAVRNNTGLARCGKSCRLRWTNHLRPDLKRGVFSHQEQSKIIHLHSLMGNKWARMAQELPGRTDNEIKNFWNTRQKKMKRAGLPLYPDDVKPSEINVDDMEAGTSCKIPQLVFNSYHQMGELCTSPIPEVPQDTTFEDQDSNLLPYISAAPVDQ 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00787 195 Gene3D - 17 70 - -
Pste8g00787 195 FunFam MYB-related transcription factor 17 70 - -
Pste8g00787 195 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 69 IPR017930 -
Pste8g00787 195 ProSiteProfiles Myb-like domain profile. 66 116 IPR001005 -
Pste8g00787 195 SMART sant 17 67 IPR001005 -
Pste8g00787 195 SMART sant 70 118 IPR001005 -
Pste8g00787 195 CDD SANT 20 65 IPR001005 -
Pste8g00787 195 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 120 IPR017930 -
Pste8g00787 195 CDD SANT 74 114 IPR001005 -
Pste8g00787 195 Gene3D - 73 134 - -
Pste8g00787 195 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 4 143 - -
Pste8g00787 195 ProSiteProfiles Myb-like domain profile. 13 65 IPR001005 -
Pste8g00787 195 SUPERFAMILY Homeodomain-like 17 112 IPR009057 -
Pste8g00787 195 Pfam Myb-like DNA-binding domain 71 114 IPR001005 -
Pste8g00787 195 Pfam Myb-like DNA-binding domain 18 65 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00787 Pste-Chr8 4044614 4046471 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00787 8 171 MYB Transcription Factor Family AT2G26960 56.627 4.82e-62 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste8g00787 Myb_DNA-binding 9.4e-13 CL0123