Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00778 AGACTTTTTCATCAGTGGAACGAACCTCCGAAGCAGAAAAGCTCCTTCTCTCTCCTTTCTCTCATTCTTCCTCAGCTTCAGAATCTCACGATTTTACAAATCAAAAGAAGGATGTCAAGCGGAGCAACACACTGGTGTTATGCATGCAGACAGCCCATCGTGCTTGATGGGAGGGATGCTATTTGCCCTTTCTGTGATGGAGGATTTGTACAAGAACTTGATGAGTTGCGAGGAATTTCACCCCACCATACCTTTTCGGCACAGTCGGGAGAGTACCATCAAATGCCTGACATTTTTGAGGCTATACATGCTTTTATGGGGCAGAGAGGTTCTGACCAGAGATTTGGACTTATGGATGCCGTTGGTAATTTCATGAGGCATAGAATGGCTGGAAGGAACTCAAACTTCGATGTTAGAGGGAGGTCTGGGTCTTTCTCAGTTCCAGAACAGAGTTGGGGTGTTTTTAGTTCTGGTCCTTTTTTAATATTTCATGGTCAAGTTCCTGGATTCACCTTGGCTACTGGCAGTCCAAGAGGCGGTCCAAGGCGTGTTGATTTTGGTGATTACTTTATGGGTCCTGGACTAGAAGAACTTATTGAGCAACTCACCATGAATGATCACCGTGGTCCACCCCCAGCCACACGATCTTCAATTGATGCAATGCCTATTATTATGATAACACAGGCACATCTTCGCTCAGATTCACACTGTCCAGTTTGTAAAGAAAAGTTTGAACTGGGTACTGAAGCCAGAGAAATGCCATGCAACCATATTTACCATTCTGAATGCATAGTTCCTTGGTTGGTTCAGCATAACTCGTGTCCTGTTTGCCGTGTTGAATTGCCACCTCAAGGACAGGTTAGTTCCCGTGGTACTCGAAGTTGGGGAGGAAGGAATGCCAGCAACAGCAGCAGTGGCGACAATGATAACTCCAGGGGCAGGGAGAACAGCCATCAGAGCCATGGAAGGAGAAATCCACTATCGTTTTTGTGGCCATTTCGCTCATCTAGCTCAAACAATAATAATCACTATTCTGAGACTGGGGGAAGCAGTTCTTCAACCACTCCTGACCAGAATAGTGGAACAAGTTATAGCGGTTGGCCCTTTGATTACTAAAAGTATCTTTTCTTCTTCTGGATAAGTATAATTTGCTGTCTAATAATGCTTGTAATTTAAAAAGCCGAGGAAAAGGCTTATTAAAAAGATTGTATTTTAAACTTAAACTCATGTAAGGAAG 1237 0.4382 RLFHQWNEPPKQKSSFSLLSLILPQLQNLTILQIKRRMSSGATHWCYACRQPIVLDGRDAICPFCDGGFVQELDELRGISPHHTFSAQSGEYHQMPDIFEAIHAFMGQRGSDQRFGLMDAVGNFMRHRMAGRNSNFDVRGRSGSFSVPEQSWGVFSSGPFLIFHGQVPGFTLATGSPRGGPRRVDFGDYFMGPGLEELIEQLTMNDHRGPPPATRSSIDAMPIIMITQAHLRSDSHCPVCKEKFELGTEAREMPCNHIYHSECIVPWLVQHNSCPVCRVELPPQGQVSSRGTRSWGGRNASNSSSGDNDNSRGRENSHQSHGRRNPLSFLWPFRSSSSNNNNHYSETGGSSSSTTPDQNSGTSYSGWPFDY 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00778 371 FunFam E3 ubiquitin-protein ligase RING1-like 201 284 - -
Pste8g00778 371 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 135 282 - -
Pste8g00778 371 SUPERFAMILY RING/U-box 217 284 - -
Pste8g00778 371 CDD RING-H2_RNF126-like 237 278 - -
Pste8g00778 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 284 IPR013083 -
Pste8g00778 371 SMART ring_2 237 277 IPR001841 -
Pste8g00778 371 ProSiteProfiles Zinc finger RING-type profile. 237 278 IPR001841 -
Pste8g00778 371 Pfam Ring finger domain 236 278 IPR001841 -
Pste8g00778 371 MobiDBLite consensus disorder prediction 330 371 - -
Pste8g00778 371 MobiDBLite consensus disorder prediction 284 371 - -
Pste8g00778 371 MobiDBLite consensus disorder prediction 285 310 - -
Pste8g00778 371 Pfam zinc-ribbon 43 73 IPR039525 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00778 Pste-Chr8 4009136 4011561 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00778 181 293 C3H Transcription Factor Family AT5G01980 42.609 4.75e-27 110
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste7g02073 7 19051096 19052220 Pste8g00778 8 4009136 4011561 ECH
Pste8g00778 8 4009136 4011561 Pste8g00778 8 4009136 4011561 ECH