Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00756 ATGATAGAAGAAGGGTGTGCAATAATGCATTTGTGTCAGCCATCTAAGGAGAGAAAAGATAAGGATGTGAAGATTGAAAGTGGTGTGGATCTGAAAGTGATGATTGAGGAGCTGGAATCAGTTGATGTGCCTTCTGTGTTCATCTGCCCAATCTCCCTTGAACCAATGCAAGACCCTGTGACCCTTTGCACTGGTCAAACCTACGACAGATCCAACATCCTCAAATGGTTCTCACTTGGTCACAAAACTTGTCCCACAACAATGCAAGAGCTTTGGGATGACTCTGTCACTCCCAACAGCACCCTATCCCACTTGATCCTCACTTGGTTCTCTCATAAGTACTTGGCCATGAAGAAGAGGCTTGAGGATGTGCAAGGAAGAGCCTTGGACCTCTTGGACACGCTCAAGAAGGTAAAGGGTCAAGCCAGAGTGAGAGCACTTCAAGATCTGAGGCAACTTGTTGGTGCTCATGTGAATGCAAGGAAGACAGTTGAGGAAAATGGTGGGGTTGCTTTGGTTTCCTCTTTGTTTGGTCCTTTCACTTCCCATGCAGTTGGGTCTGAAGCAGTTGGGATCATTGTGAATTTGGATTTGAGTTCTGAGGTGAAGGGAAGTCTCGTGCATCCTTCTAAGGTGTCATTGTTGGTGGATATTATGAATGAGGGAACCATTGAGACAAAAGTGAACTGTGCCAAGTTGATTGAGATGTTGTTGATGGAAGAAGGGAACAATGCGACTCAGTCTCGGATTGAGATTGTCTCAAGCTTGAGTCTTTTAGTTGGGTTGTTGAGGTTGGTGAGGGATAAGAAACATCCAACTGGGGTCTCAACTGGGCTTGTGTTACTCAAGGCTATAATATGTTCCTATGAATCAGTTAGAAGCTCTGTGATAAGCCTAGGAGCAATTCCTCTATTGATTGAGCTTTTGCCTAGTTTGAATAATGAGTGTTTGGAGAAAGCACTGTACATTGTTGAGGTGTTATCAACTCTTCCAGAGGGAAGAATGGCTTTGAAAGAATGTCCAAAATTTATTCCCAATGTGGTCAAGTTGCTGATGAGAGTCTCAGAGAGCTGCACTCAGTTTGCTTTGTCAATATTGTGGACTATTTACAAGCTTGCCCCTGAAGAATGTGCCTCACAGGCTGTGGAGGCTGGGTTGGCAGCAAAGCTTCTGTTAGTCATTCAGAGTGGCTGCAACCCTGTGTTGAAGCAAATGTCTTCTGAGTTTTTGAAAATGTGCAGTCTGAATTACTCTACTAGCATCTTGGTTTCCAATTGTATGCTCACCACAACAATACAATGA 1302 0.4409 MIEEGCAIMHLCQPSKERKDKDVKIESGVDLKVMIEELESVDVPSVFICPISLEPMQDPVTLCTGQTYDRSNILKWFSLGHKTCPTTMQELWDDSVTPNSTLSHLILTWFSHKYLAMKKRLEDVQGRALDLLDTLKKVKGQARVRALQDLRQLVGAHVNARKTVEENGGVALVSSLFGPFTSHAVGSEAVGIIVNLDLSSEVKGSLVHPSKVSLLVDIMNEGTIETKVNCAKLIEMLLMEEGNNATQSRIEIVSSLSLLVGLLRLVRDKKHPTGVSTGLVLLKAIICSYESVRSSVISLGAIPLLIELLPSLNNECLEKALYIVEVLSTLPEGRMALKECPKFIPNVVKLLMRVSESCTQFALSILWTIYKLAPEECASQAVEAGLAAKLLLVIQSGCNPVLKQMSSEFLKMCSLNYSTSILVSNCMLTTTIQ 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00756 433 CDD RING-Ubox_PUB 44 96 IPR045210 -
Pste8g00756 433 ProSiteProfiles U-box domain profile. 42 116 IPR003613 GO:0004842|GO:0016567
Pste8g00756 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 124 IPR013083 -
Pste8g00756 433 PANTHER WDSAM1 PROTEIN 36 420 IPR045185 GO:0061630
Pste8g00756 433 Pfam U-box domain 43 113 IPR003613 GO:0004842|GO:0016567
Pste8g00756 433 SUPERFAMILY ARM repeat 135 414 IPR016024 -
Pste8g00756 433 SUPERFAMILY RING/U-box 37 111 - -
Pste8g00756 433 SMART Ubox_2 46 109 IPR003613 GO:0004842|GO:0016567
Pste8g00756 433 Gene3D - 129 413 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00756 Pste-Chr8 3928210 3929511 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00756 26 433 U-box Gene Family AT3G49810 63.725 0.0 526