Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00702 ATGGCTTCTGAAGATAAAGTCCTCTATGCTGTGTCTTGTACTGAAAAAACCTTTAACGATATCCATGTTAAACCTTATGGAAATGTTCTTGAAGACACTTGTGATGTCTCCACTGCAATGCATTGTGCTAAGAATGGTGACATGGAAGACTCCCTTGTGCATGAAAAGAGAATTGAGGTGATGGGGGAGGTATCCACGAATGAAAAGCAAGAAGAGAGGCAAACTCACACTAAGAGAAAGATCATCACTCCTGAAATGATTAGGAGAATGAAAATTTTTGTTGGAGGCTTACCTTCTGGCATATCAGAAGAGGAGTTTAGGAAATATTTTGAAAGGTTTGGAACAATAACTGATGTGGTGGTGATGCAAGACAGTGTGACACACAGGCCTAGAGGATTTGGATTCATCACATTTGATTCAGAAAAATCAGTTGAAGATGTTATGATGAATAGATTCTATGACCTGAATGGTAAACAAGTGGAGGTGAAGAGGGTGGTGCCAAAAGAGGAGAATGGTGCTCCTAATAAATTAAGATCCAACAATGGAAAAGGAACTTCTTGGGAAAATTTTCCTTATTATAATACCAATATCATTCAAACACATCCTTGGTACAATAATAATGGATTATATGTTCCTGTACCAAACTATGGTTGGTACCCTATGCCTGGTGCTTCTCTCTCTTGGTGTATGCCCATGGTACCCATGACTCATTCATGTCCACAGCCTTTTGGTTATAGTTTTCCAAGTTATCCTTGTTTTGGTGGGAATCATATGCCTGCCAGAAACAAATGA 792 0.3902 MASEDKVLYAVSCTEKTFNDIHVKPYGNVLEDTCDVSTAMHCAKNGDMEDSLVHEKRIEVMGEVSTNEKQEERQTHTKRKIITPEMIRRMKIFVGGLPSGISEEEFRKYFERFGTITDVVVMQDSVTHRPRGFGFITFDSEKSVEDVMMNRFYDLNGKQVEVKRVVPKEENGAPNKLRSNNGKGTSWENFPYYNTNIIQTHPWYNNNGLYVPVPNYGWYPMPGASLSWCMPMVPMTHSCPQPFGYSFPSYPCFGGNHMPARNK 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00702 263 CDD RRM2_Hrp1p 91 168 - -
Pste8g00702 263 Gene3D - 53 185 IPR012677 -
Pste8g00702 263 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 92 158 IPR000504 GO:0003723
Pste8g00702 263 SUPERFAMILY RNA-binding domain, RBD 88 188 IPR035979 GO:0003676
Pste8g00702 263 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 90 167 IPR000504 GO:0003723
Pste8g00702 263 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 56 206 - -
Pste8g00702 263 SMART rrm1_1 91 163 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00702 Pste-Chr8 3692117 3693174 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00702 52 139 Eukaryotic Initiation Factors Gene Family AT1G22760 31.818 4.74e-06 45.8