Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00688 ATGACGCGCGAAGCCCCACAAAGGCTGATTATTGGAGAGAGAGGTTGGGGAATTGAAGAACCCATCTCAGTTTCACTTTCCATAGCAAGCCAAAGTGAGAACCGAGAAAAAGAAAGGACTTCAGTTTTGAGAGATAAATGGAAAAAGAAGGCTAGGCTCCCAGTGGAAGGAAATTATAAACTACTACAACTACAAGTTGTGGCTACTACAAGGAGGTTACCTTCAGATTCTGGTGCCTTTGCAGACTGGGCAGCGACAACTGGCTCCGGTGGTGGCCGCGCTGTCCCCGTCGACGACCTCTCCCTCGGCTTCAATGCGGCTCCTCCCGCGGCTACAGCCGCCACCGGACCCACCGCCGGAATGTGGCCTGGCGCAGCTAGGTCAATCAATTACCCTGAAATGGGGATGTTCGTTGTGGCGCCGGCCTCCTCCTTCCACCACCACCATCACCATCACCACCAGGCCCCGCCGCCACACGACCCCGTCATGGCGGATTCCCTCAACCCGGCTACTGCACTGGGCGTTGGCGTCATCCCCCTCCTCGCCGCCACGCCGTGTCTGGAATCCGACAACATCCTCGGAAATAGGACACGTGGCGGGGGAATTCAGTTTTGGCAAGACCAACCGCAGCATCAAAGCAACTATATGAAGAAGCAGCAGCAGCAGGGTGGTGTTCTCGACCATAGTAACACTAGTTCCGGGAATTTGGTTCAGAACAGTGGCGGCGTAACTGCTTCGGGAACTAGTAGTGGGGGAACAACGTGCCAAGATTGCGGAAACCAGGCTAAAAAAGATTGTGCCAATAGAAGGTGTAGGACTTGTTGCAAAAGTCGAGGTTTTGATTGCCCTACTCATGTTAAGAGCACTTGGGTCCCCGCCGCCCGCCGGAGAGAGCGCCAGCTTATGACGGCCGCCACCACCGCCATTGCTGGCTCCACTGGCTCCTCCTCTGGGACTAAAAAACCTAGGCTCATTACTTCACAAACCACCACAACTTCTCACACTTCCACTTCTAACACCACCCCTCCTCGAAGCTTTGACACCAGCTCTAGCCATCAAGATGCGGGTTTCAAAGAGTCCTTACCTGGGCAAGTACGTGCACAAGCGGTTTTCAAGTGTGTTAGAGTGACGGCTGTAGAGGATGGGCAAGATGAGTATGCGTATCAGGCTGTGGTGAAGATTGGTGGCCACGTGTTCAAAGGGTTTCTCTATGATCAAGGGGTTGAGAATAGGGATGTGTATCCTAACCTATCTGAGTTGCATTTGGGTGGTGGAAGTGGAAGTGGAGGCAGTGCTGGAAGAAATGGGGTTTCATCTTCGTCTCCTATGATGGATCCTTCTGATGTTTATGCAGCTTCAGCTGGAGGGTTACTTGGGGGGTCTTCAGCTTATGGTAATCCAATGAATTGAACTCAATGTCAGTGTCTCTTTCCGAGTGCAAGATATTAGTAGATGGGCTTGGAGAGGCTGACGTACGTTGTAGTCTACAATCTTTAATTTTCTTCTAGTCTTTGTATCTTTATTGCATATCTCACTCTTTCTTTCTGCTATTCTTCAACTTCATTTTAGTTCTATTCTTTCTCTCCCAACTTGGCCCTTCTCATGCAATGAGATCATCCTTATTGAATGACAAAGGAGCCTCACTATCTAACTGTTAAAAGAAATAGTTTCTTATGTACTAAATTAACTCTAAATGGAAACAAAAGGTGGAGAAAACTTGTTTTACCTGCTTCCCTA 1737 0.498 MTREAPQRLIIGERGWGIEEPISVSLSIASQSENREKERTSVLRDKWKKKARLPVEGNYKLLQLQVVATTRRLPSDSGAFADWAATTGSGGGRAVPVDDLSLGFNAAPPAATAATGPTAGMWPGAARSINYPEMGMFVVAPASSFHHHHHHHHQAPPPHDPVMADSLNPATALGVGVIPLLAATPCLESDNILGNRTRGGGIQFWQDQPQHQSNYMKKQQQQGGVLDHSNTSSGNLVQNSGGVTASGTSSGGTTCQDCGNQAKKDCANRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLMTAATTAIAGSTGSSSGTKKPRLITSQTTTTSHTSTSNTTPPRSFDTSSSHQDAGFKESLPGQVRAQAVFKCVRVTAVEDGQDEYAYQAVVKIGGHVFKGFLYDQGVENRDVYPNLSELHLGGGSGSGGSAGRNGVSSSSPMMDPSDVYAASAGGLLGGSSAYGNPMN 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00688 469 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 144 453 IPR007818 GO:0003700|GO:0006355
Pste8g00688 469 NCBIfam putative zinc finger domain, LRP1 type 254 296 IPR006510 -
Pste8g00688 469 MobiDBLite consensus disorder prediction 209 254 - -
Pste8g00688 469 Pfam Domain of unknown function (DUF702) 252 409 - -
Pste8g00688 469 MobiDBLite consensus disorder prediction 307 357 - -
Pste8g00688 469 MobiDBLite consensus disorder prediction 424 444 - -
Pste8g00688 469 NCBIfam LRP1 C-terminal domain 361 408 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00688 Pste-Chr8 3618207 3620957 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00688 64 449 C2H2 Transcription Factor Family AT5G12330 51.675 5.34e-98 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Pste8g00688 DUF702 4.4e-61 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g00688 8 3618207 3620957 Pste8g00688 8 3618207 3620957 ECH