Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00687 ATGGTTTGGAAGGAAGATTTGGTGGGGCCCACAGTTGAGAAACCATATGATAAACAGGAAGCATTTTTTCCCCTTTTACTGAGCATTGAAGCAGTAGACTTGATCTTAGGGTTTTTGAAGGAACAGATGGGGGGTCAAGAAAATGCCATGGGGTTTCAACATGGAAACGAGAGCATTCTGACTTGTCCATCTTCAGGTCTCAATGTTGCAAATGTTAATGTTTCAGAAATGGCTATTAGTTCTGTTTCTATGGCCAAACCTTCAGATGTAGCTAACCCTTTTCTTGCTTCTTCCGCTTGGGATCCACTTGTTTCCTTGAGTCAGGCTCAAACTTTTGGAGGCTCCTCGATGGTTTCTCACAGTGAGTTTGCCAATGCCAATTCATCTTACCCTCTTGTTTTGGAAAACCAGGGAATGAGCAACACTTCCCACCTTGTTCAATACATGTCTGACTCAAATCTTGGGGGAATGGTCCCCAAAGTTCACTCCTACGCAAGTGGGGGCTTCTCAGAAATGGTTGGTGCTGCCTCTTTTGGCCAACATGGGTCTGGTGATGTGGCTAACACAGGGTACCCACCTCATTATAATCCGATCAAGGAGGCTCCAATTAATGGTGAACAATCTCAGGTTGAGGATTCAATTCCTGAAGAGGAAAATGCTGAGGGTGATGCTGTGAAAGATTCTCCTGGGATGGCCTCTGATGGTCCAAAAGAAAACGAAAAGAAACCAAAAGTTGAGCAGAATAATAGTGATTTGCGTGGTAAGCAATCAGTGAAGCAAGCTAAAGACAACAATTCTCTAAGTGGAGGAGAAGCTCCTAAAGAAACTTTCATTCACGTGAGAGCTCGAAGAGGACAAGCCACAAACAGCCACAGCCTTGCAGAAAGAGTGAGGAGAGAAAAGATTAGTGAGCGAATGAGGTTACTTCAAGAACTTGTTCCAGGATGCAACAAGATAACTGGCAAAGCTGTAATGCTTGATGAGATAATAAACTACGTGCAATCACTTCAGCAACAGGTTGAGTCAACTTATCAAAGAGATATTTTGCAGTTTTTGTCCATGAAACTTGCCACAGTGAACCCAGAACTGAACTTTGATGTGGACCGGATCTTATCCAAGGATATTCTCCAATCACGCTTAGGTCATGGAATTGGTGCATATGGTCCTGGTATCAATTCCTCTCACACATTCCCCAATGGAAATTTCCATGGAATATTGGCTGGCATGCCTAATACATCTTCACAATTCCCTCATTTGCCCCAGAATGTTTTGGACCACGAGTTCCAAAGCTTCTATGGAATTGGATACGATTCTAATACAGCACTTGACAACTTGGGACCCAATGGGCGGTTGAAAACAGAGTTATAGTGTGTGGATTATTATATAGCGATGTTACTACAACAACAAAGACTTTGGAATTTTCTTGTTGACTGCACAATTTAACTGAAGTTAAAAATGGGGGACAATAGAGAGGGAAAGAAAAAGGAATAAAAGTTTTAGTTGTATAGGGTGTTTAATACCTAGCTGTTGGCTCTTCGAATTTTTAGCAGAAGATGACTTGTTAGATTTATGAATTGGAAAATGAGTTACACATATTAATATTATGTGTGGAATCTAGATCATGTAGAACAAGTTGCAGTGCACTTGTTTAATGACATGGAGAGCAGTATTTTGAGGAGTATGCGAGTAAAACTGTTTGCAACTATCATTACTTTTATTGAATTATTACTATGTATAGAGTTGCTGGGTTCAGATTTTTTAAGCACCATCATTTTCAAATTGTTGTTGATTGGATTATGTGTGTACTTGTGCAAGGGTTTATG 1823 0.407 MVWKEDLVGPTVEKPYDKQEAFFPLLLSIEAVDLILGFLKEQMGGQENAMGFQHGNESILTCPSSGLNVANVNVSEMAISSVSMAKPSDVANPFLASSAWDPLVSLSQAQTFGGSSMVSHSEFANANSSYPLVLENQGMSNTSHLVQYMSDSNLGGMVPKVHSYASGGFSEMVGAASFGQHGSGDVANTGYPPHYNPIKEAPINGEQSQVEDSIPEEENAEGDAVKDSPGMASDGPKENEKKPKVEQNNSDLRGKQSVKQAKDNNSLSGGEAPKETFIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVESTYQRDILQFLSMKLATVNPELNFDVDRILSKDILQSRLGHGIGAYGPGINSSHTFPNGNFHGILAGMPNTSSQFPHLPQNVLDHEFQSFYGIGYDSNTALDNLGPNGRLKTEL 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00687 455 CDD bHLH_AtBPE_like 277 370 - -
Pste8g00687 455 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 177 404 IPR024097 GO:0006355
Pste8g00687 455 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 284 345 IPR036638 GO:0046983
Pste8g00687 455 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 286 336 IPR011598 GO:0046983
Pste8g00687 455 MobiDBLite consensus disorder prediction 250 271 - -
Pste8g00687 455 SMART finulus 292 342 IPR011598 GO:0046983
Pste8g00687 455 Pfam Helix-loop-helix DNA-binding domain 289 337 IPR011598 GO:0046983
Pste8g00687 455 Gene3D - 283 356 IPR036638 GO:0046983
Pste8g00687 455 MobiDBLite consensus disorder prediction 206 274 - -
Pste8g00687 455 MobiDBLite consensus disorder prediction 233 249 - -
Pste8g00687 455 FunFam Basic helix-loop-helix transcription factor 283 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00687 Pste-Chr8 3602352 3607216 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00687 43 455 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10120 40.421 1.16e-73 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste8g00687 HLH 4.9e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g00687 8 3602352 3607216 Pste8g00687 8 3602352 3607216 ECH