Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00677 TTGGGCAATACCCCTGCTTACCATGTCACAACACAACTCTCTAGCTTTCCATTTCACCAATCTTGCAAAAGCCATCCATCAATGTATTGTAGGTCACAACATCGGGCTTAATGCTCCTTTGAGTCATGGTCTGAAACAAACCAAGTGCCCTACTCATGTTCCCATGCTTACAATATCCATGAATGAGAGTGGTAAGGGTATAGTAATCTGGAAAAACTCCCCTTTCGACCATCTCCTTAAACAAGTCATCGGACTCAAGCCATTCCACGCGGAGCAAGTCATCGAAAAGGCTCCTGGCCCTCTCAAAATCCCCATTCTTACAGAAGCCAATGATAATAGCATTGAGGGCGAAGAAGATGAAGCTCTCGTCCCAGCTCTGCTGTGCTCTTCGCCATTGCCACCCCACTCAAACCCTGCAATTTCCAATTTCTCTTATCACAATCAACAAACTTACCACATAAACATAATTCATAGACAAACTGAACAATCCTTTCTTTCTGAATTGCAATCCGAAGAAAATAAAGTCTCCAATGAGAAAAATAAGAAAAGAAAACTGAAAACACCAGCCCAGCTTAAGGCCTTGGAGATTTTTTATAATGAACACAAATATCCCACTGAGGAAATGAAAGTAGACCTTGCTGAGGAGTTAGGATTGACAGAAAAGCAAATATCCGGATGGTTTTGCCACAGAAGGTTAAAAGATAAAAGGTTGATGAAAGATGAAGCTGTTGCTAATGGACGACAAGATCGCTCGAGTGGTGTCATCCAAGATCGTGGTAGTGGACTTGGGCAAGATTCATGCGGAAGCAGTAAACAAGCTGATTATAGATATCTGGATCCTAAGGAGGTTGAGAGCCATGGCCTCTACAATCATGAATTATCAGTTGCAGATATGACCCACAGACGTAGGAACCGTTATGCTGAAAATGTTAGCGGAATGGATGACACATCATCTGAGAGCAGCTCATTTTTGCAAGAAAGGTTGTTTTCTCAAGGTCAGGATCCATATGATATAGAGCCTTCTAGACATCTTACACCTAATGGAGCTCTTCCACCCCTAAATCCCAAGGGTGCAGTTAACATGGGATACAAACCATCAGGATATTTGAAAGTGAAGGGTGAGATAGAACATGCTGCTATAACTGCTGTTAAAAAGCAATTAGGAAGGCATTATCAGGAAGATGGTCCACTACTTGGTATAGAATTTGAACCGCTTCCTCCAGGGGCATTTGAATACCAAACTGCAGATCCAGCTAATGAACCATACTCTGTTGCAAATCCCCCGCTCCCAAATTCTCCTGAAATCTCTGCTGCAAAAAGACAACCCAGTCTTAGCTCTAGATATGCTTCATATTATACTAAATTTAATTCACAAGATTTGCATACAGAAGGAGCTGACTTTGGCTCCTTGCATGAATCTGATTTCCAGGATAAACAAGATAAGAAAGTGCGCCATAATATAAAACAAAAGCAATCTTTCTATGGTTATACCAATCATTTTCCTGGAAGGAACTCTTTTCCGGATTTGTATGAAGACTCTACTGGAGAAGCGACTGCTTATAATAGCTCTAAGAGTTATAAAATGAGCACCAAACATGGTGTTGAGGGGATGCGATCTGATTCTGCTTCTAACCTCAGTGATCACTATGAAGAGAAGCTTTCAGTTAAGCAGAAAGACTTGATGCTGCATGGTTATGATAACATCAATCCAAAGAATATACAAAGGAGTGAACATGTAAAATCTAAACCTTCTGGTTCAATCCGTAATCCCCGTGTTCCTATGGATACTGAAGAACGGGGGTTATGTGCTAGGATGGCCAAGGAAGAGAAGTTTAAGGTGGACAGGAAAGCAAAAAATACATATCCTGATGTAGAAGGAGCAGGATTGCTTTCAAATGAAATCATGGTTGCAAAACGAGCTAAAATTGACATGCTTCAACAGTACAACGTGAAACAATCACCTGTTGCTGAGATGGAACAAAGGAAAACTCAGAGATCTGCGGCAGAGATGCCTTCTAGCTTTAGCGAGGATGAAACTGCTGAAACCAGTTCCTCATTGGATTATTAAGTGCTTTGATAGATGGTAACTAGTTTGCAGGGTTTCTCTACTCCATTGGGTGTGTACAGTCTAAAAAGACATACATTTTCCCTGTAACATATGGGAACCACTGTTTCTGGCACCAATAGCAGTGACTTACTCCATTTTCTGTTTTTTGAGCTCACCTAAACGCCTTTGTAAAAAAAAAAAAGCCCCCCTTTTTTTATGTAAAATCTCATTTCATGAAGCTGCTTGTGGTAGGTTAAATGCAGCTTGTATACTTGTCATTTGTCTTTTATTAGTTTAATTTATGGTAGTGAGTTTGG 2364 0.4065 MSQHNSLAFHFTNLAKAIHQCIVGHNIGLNAPLSHGLKQTKCPTHVPMLTISMNESGKGIVIWKNSPFDHLLKQVIGLKPFHAEQVIEKAPGPLKIPILTEANDNSIEGEEDEALVPALLCSSPLPPHSNPAISNFSYHNQQTYHINIIHRQTEQSFLSELQSEENKVSNEKNKKRKLKTPAQLKALEIFYNEHKYPTEEMKVDLAEELGLTEKQISGWFCHRRLKDKRLMKDEAVANGRQDRSSGVIQDRGSGLGQDSCGSSKQADYRYLDPKEVESHGLYNHELSVADMTHRRRNRYAENVSGMDDTSSESSSFLQERLFSQGQDPYDIEPSRHLTPNGALPPLNPKGAVNMGYKPSGYLKVKGEIEHAAITAVKKQLGRHYQEDGPLLGIEFEPLPPGAFEYQTADPANEPYSVANPPLPNSPEISAAKRQPSLSSRYASYYTKFNSQDLHTEGADFGSLHESDFQDKQDKKVRHNIKQKQSFYGYTNHFPGRNSFPDLYEDSTGEATAYNSSKSYKMSTKHGVEGMRSDSASNLSDHYEEKLSVKQKDLMLHGYDNINPKNIQRSEHVKSKPSGSIRNPRVPMDTEERGLCARMAKEEKFKVDRKAKNTYPDVEGAGLLSNEIMVAKRAKIDMLQQYNVKQSPVAEMEQRKTQRSAAEMPSSFSEDETAETSSSLDY 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00677 681 ProSiteProfiles 'Homeobox' domain profile. 170 230 IPR001356 GO:0003677
Pste8g00677 681 SMART HOX_1 172 234 IPR001356 GO:0003677
Pste8g00677 681 Pfam Homeodomain 174 229 IPR001356 GO:0003677
Pste8g00677 681 Coils Coil 158 178 - -
Pste8g00677 681 MobiDBLite consensus disorder prediction 646 681 - -
Pste8g00677 681 SUPERFAMILY Homeodomain-like 170 234 IPR009057 -
Pste8g00677 681 CDD homeodomain 174 229 IPR001356 GO:0003677
Pste8g00677 681 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 159 680 - -
Pste8g00677 681 MobiDBLite consensus disorder prediction 242 264 - -
Pste8g00677 681 MobiDBLite consensus disorder prediction 236 264 - -
Pste8g00677 681 Gene3D - 162 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00677 Pste-Chr8 3534697 3548540 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00677 160 680 Homeobox Transcription Factor Family AT4G03250 41.176 4.86e-92 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pste8g00677 Homeodomain 3.7e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g00677 8 3534697 3548540 Pste8g00677 8 3534697 3548540 ECH
Pste7g00980 7 9061876 9067765 Pste8g00677 8 3534697 3548540 PCT