Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00674 ATGGAAGGGTTCGGGTACGAGAACGGAATGGCTTCGGATCTTAGCAGAACCGGTCCTGTGGAAAGAGACATTGAGCAGGCCATTACTGCTTTAAAGAAAGGGGCCTGCTTGCTCAAGTATGGAAGAAGGGGAAAGCCCAAGTTCTGCCCCTTCCGTCTTTCCAATGATGAATCTGTTTTGATATGGTTCTCAGGGAAAGAAGAGAAGCACCTTAAACTGAGTCATGTCTCAAGAATTATATCTGGACAACGCACACCTATCTTTCAAAGATATCCACGACCTGAGAAAGAGTACCAGTCATTTTCTCTTATCTACAATGATAGGTCACTGGACTTGATATGCAAGGATAAAGATGAAGCTGAAGTTTGGTTCAGTGGTTTGAAAGCACTAATTTCACGCAGCCATCACCGGAAGTGGAGAACAGAGTCAAGAAGTGATGGTATTCCATCTGAGGCTAATAGTCCTCGAACATACACCAGAAGAAGTTCTCCCTTGAATTCTCCCTTTGGCAGTAATGAAAGCCTGCAAAAGGATAGTGGGGAACACCTTCGCCTTCATAGTCCATATGAGAGCCCCCCTAAGAATGGTTTGGATAAAGCACTAGATGTGGTTTTATATGCTGTCCCTCAAAAAGGTTTCTTCCCTCCAGATTCTGCCAGTGCTTCAGTACATTCTGTGTCATCTGGAGGATCAGACAGTATGCATGGTCACATGAAGACAATGGGCATGGATGCTTTTAGAGTTAGTCTATCAAGTGCTGTTAGTACTTCTAGCCAAGGATCTGGTCATGATGATGGTGATGCTCTAGGGGATGTTTTCATTTGGGGGGAAGGTACAGGTGATGGTGTTTTGGGTGGTGGGAATCACCGAGTTGGAAGTTGTTTGGGTGTAAAAATGGATTCTCTATTTCCCAAAGCCTTGGAATCTGCAGTAGTTCTTGATGTACAGAATATTGCTTGTGGTGGACGACATGCAGCCCTAGTTACCAAACAAGGTGAAATTTTCTCCTGGGGAGAGGAATCAGGCGGCAGGCTTGGGCATGGTGTTGACTCTGATGTTCTCCATCCAAAGCTTATAGAAGCTTTAAGTAATACAAATATTGAACTTGTAGCTTGTGGGGAGTATCATACATGTGCTGTGACACTTTCTGGTGATCTCTATACATGGGGTAATGGCACATACAATTATGGCCTTCTAGGACATGGAAATCAAGTGAGCCACTGGGTACCGAAAAGAGTAAATGGACCCTTGGAAGGCATTCATGTTTCATATATTTCTTGTGGACCATGGCACACTGCTGTTGTAACATCTTCTGGTCAATTATTTACTTTTGGTGATGGTACATTTGGTGCTTTGGGTCATGGAGACCGAAAAAGTGTTTCATTACCAAGGGAAGTGGAGTCCCTCAAGGGTCTTCGAACTGTTCGGGCTGCCTGTGGTGTTTGGCATACTGCTGCAGTTGTGGAAGTCATGGTTGGAAATTCAAGTTCCAGCAACTGCTCTTCGGGGAAGCTGTTTACTTGGGGTGATGGAGACAAAGGTCGACTCGGGCATGGTGATAAGGAAGTAAAACTTGTTCCAACCTGTGTTGCCCTTGTTGAACCCAATTTTTGTCAAGTTGCTTGTGGACATAGTCTCACTGTTGCCCTTACCACATCTGGCCATGTCTATACAATGGGTAGTCCTGTCTATGGCCAGTTAGGAAATTCTCAAGTTGATGGGAAGCTACCAACCCGTGTTGAAGGGAAATTGTCAAAGAGTTTTGTGGAGGAGATTGCTTGTGGTGCATATCATGTTGCAGTTTTAACTTCAAGGACTGAAGTTTACACTTGGGGGAAAGGTGCAAATGGCCGTTTAGGCCATGGGGATACAGATGATAGAAATACCCCAACATTAGTAGAAGCTCTGAAAGACAAAGATGTCAAAAGTATTGCTTGTGGAACTAATTTCACTGCAGCTATATGTCTGCATAAGTGGGTATCTGGTATTGACCAGTCTATGTGTTCAGGCTGTCGTATGCCATTTAATTTCAAAAGAAAACGCCACAATTGTTACAATTGTGGACTTGTTTTTTGTCATTCATGTAGCAGTAAGAAGTCTCTTAAAGCTTCAATGGCACCAAACCCCAACAAACCTTATCGGGTCTGTGATAATTGTTATAATAAACTTAGGAAAACTGTAGAAACTGATTCATCATCTCATTCTTCTGTGGGCAGAAGAGGAAGTGTCAATCAGGGATCTCTGGAGTTAATTGATAAGGATGATAAATTGGATTCCAGATCTCGTAATCAACTTGCCAGGTTTTCTTCAATGGAATCCTTCAAACAAGTGGAAAGTAGATCTTCAAAGAAAAACAAGAAATTGGAATTCAACAGCAGCCGTGTATCGCCCGTTCCAAATGGGGGCTCACAATGGGGAGCGTTGAATATTTCTAAATCTTTTAATCCTGTTTTTGGATCATCAAAGAAATTCTTCTCAGCTTCTGTTCCCGGATCTAGAATTGTTTCCCGCGCAACGTCACCAATATCTAGACGTCCTAGTCCACCTCGTTCAACTACACCGACCCCAACACTGGGAGGTCTTACATCCCCAAAAATAGTTGTGGATGATGCTAAGAGTACTAACGATAGCCTCAGTCAGGAGGTTATTAAATTAAGATCACAGGTGGAAAACTTGACTCGAAAGGCCCAACTTCAAGAAGTTGAGTTGGAAAGAACAACTAAACAGCTAAAAGATGCAAGAGCAATTGCCGGGGAAGAAACCGCCAAATGTAAAGCAGCAAAGGAAGTAATAAAGTCACTTACTGCCCAGTTGAAGGACATGGCTGAGAGGTTACCTGTAGGAGCTGCTAGGAATGTGAAATCACCGAGTCTTGCTTCTTTTGGTTCCAACCCTTGTTCCAATGATGTTAGCTATGCTTCCATTGATCGGTTAAATATTCAAGCAACAAGCCCAGAGGCAGATTTAACTGGATCAAACAACCAGTTACTTTCAAACGGATCAAGCACTGTCAGTAACCGTAGCACAGGACACAATAAACAGAGTCAGTCAGATTCAAGTAATAGAAATGGGAGCAGAATTAAGGACAGTGAATCACGTAATGAAACTGAATGGGTTGAGCAAGATGAACCTGGCGTATATATCACACTCACCTCCCTTCCAGGAGGTATAATAGATCTCAAGAGAGTTCGCTTCAGTCGGAAGCGCTTCAGTGAGAAGCAAGCAGAGCAATGGTGGGCTGAGAATCGTGCAAGAGTATATGAACAGTACAATGTGCGCATGATTGACAAGTCTTCTGTTGGTGTTGGGAGTGAAGACCTGGCTCATTGACATGGCAACCTGTAAATGAGATGTTTTTCCAGATTTTGGCTGGGATTAGAGCAAAGATTGCACTGATCAATTACATTTGGCTTCCATCTAATATAAAACGACGAGGGAAGCTGAGAATTGGCATAGTAGGAGAGAATAGGGATTGATTGTGATTCTGTAATTCCTATAAGTTTTCTTCTTCTTTTTCCACTTTTATTTCTATTTCCATTTTTTCCCTATATGATGTTGTGTGGGGGGTTGAGGGTGAGAAATGTAAATTCTTAGTAGGTTGCAGGCTCTGCTTGAAATGAGCTGCAGTGTAAATTTCATAAGCGAATGCATTTGCAAAATTTTCTTCTACACGGGATATCAATTCTTCCAGCCTTGGGAAGAACGGCACTAAGTAGTTAATTGTTAAAATATACATGGCAGGCCAATTGCATACTTTTAATTTTTCCTGCTCTTGCAGTAATACGTAGACATATCTAACCAGGAGACCCTTGCGCCACTTTGTTCATTAATTTTAAC 3837 0.4256 MEGFGYENGMASDLSRTGPVERDIEQAITALKKGACLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRSHHRKWRTESRSDGIPSEANSPRTYTRRSSPLNSPFGSNESLQKDSGEHLRLHSPYESPPKNGLDKALDVVLYAVPQKGFFPPDSASASVHSVSSGGSDSMHGHMKTMGMDAFRVSLSSAVSTSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGNHRVGSCLGVKMDSLFPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESGGRLGHGVDSDVLHPKLIEALSNTNIELVACGEYHTCAVTLSGDLYTWGNGTYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSYISCGPWHTAVVTSSGQLFTFGDGTFGALGHGDRKSVSLPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGDKEVKLVPTCVALVEPNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNSQVDGKLPTRVEGKLSKSFVEEIACGAYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNTPTLVEALKDKDVKSIACGTNFTAAICLHKWVSGIDQSMCSGCRMPFNFKRKRHNCYNCGLVFCHSCSSKKSLKASMAPNPNKPYRVCDNCYNKLRKTVETDSSSHSSVGRRGSVNQGSLELIDKDDKLDSRSRNQLARFSSMESFKQVESRSSKKNKKLEFNSSRVSPVPNGGSQWGALNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTSPKIVVDDAKSTNDSLSQEVIKLRSQVENLTRKAQLQEVELERTTKQLKDARAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGAARNVKSPSLASFGSNPCSNDVSYASIDRLNIQATSPEADLTGSNNQLLSNGSSTVSNRSTGHNKQSQSDSSNRNGSRIKDSESRNETEWVEQDEPGVYITLTSLPGGIIDLKRVRFSRKRFSEKQAEQWWAENRARVYEQYNVRMIDKSSVGVGSEDLAH 1109
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00674 1109 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 477 487 IPR000408 -
Pste8g00674 1109 ProSiteProfiles BRX domain profile. 1036 1091 IPR013591 -
Pste8g00674 1109 FunFam PH, RCC1 and FYVE domains-containing protein 1 241 492 - -
Pste8g00674 1109 PRINTS Chromosome condensation regulator RCC1 signature 543 561 IPR000408 -
Pste8g00674 1109 PRINTS Chromosome condensation regulator RCC1 signature 384 400 IPR000408 -
Pste8g00674 1109 PRINTS Chromosome condensation regulator RCC1 signature 425 441 IPR000408 -
Pste8g00674 1109 PRINTS Chromosome condensation regulator RCC1 signature 334 350 IPR000408 -
Pste8g00674 1109 PRINTS Chromosome condensation regulator RCC1 signature 315 328 IPR000408 -
Pste8g00674 1109 PRINTS Chromosome condensation regulator RCC1 signature 441 455 IPR000408 -
Pste8g00674 1109 PRINTS Chromosome condensation regulator RCC1 signature 601 622 IPR000408 -
Pste8g00674 1109 Pfam Transcription factor regulating root and shoot growth via Pin3 1035 1090 IPR013591 -
Pste8g00674 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 270 331 IPR000408 -
Pste8g00674 1109 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 318 328 IPR000408 -
Pste8g00674 1109 MobiDBLite consensus disorder prediction 146 176 - -
Pste8g00674 1109 MobiDBLite consensus disorder prediction 791 805 - -
Pste8g00674 1109 Pfam Unstructured region between BRX_N and BRX domain 960 1029 - -
Pste8g00674 1109 Coils Coil 924 944 - -
Pste8g00674 1109 Coils Coil 868 916 - -
Pste8g00674 1109 MobiDBLite consensus disorder prediction 985 1039 - -
Pste8g00674 1109 SUPERFAMILY PH domain-like 23 131 - -
Pste8g00674 1109 CDD FYVE_like_SF 667 720 - -
Pste8g00674 1109 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 425 435 IPR000408 -
Pste8g00674 1109 Pfam Transcription factor BRX N-terminal domain 919 952 IPR027988 -
Pste8g00674 1109 CDD PH_PLC_plant-like 22 132 - -
Pste8g00674 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 554 605 IPR000408 -
Pste8g00674 1109 SUPERFAMILY RCC1/BLIP-II 269 659 IPR009091 -
Pste8g00674 1109 MobiDBLite consensus disorder prediction 1024 1039 - -
Pste8g00674 1109 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 67 940 - -
Pste8g00674 1109 MobiDBLite consensus disorder prediction 836 864 - -
Pste8g00674 1109 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 662 724 IPR017455 -
Pste8g00674 1109 MobiDBLite consensus disorder prediction 985 1023 - -
Pste8g00674 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 439 490 IPR000408 -
Pste8g00674 1109 Pfam Regulator of chromosome condensation (RCC1) repeat 438 487 IPR000408 -
Pste8g00674 1109 Pfam Regulator of chromosome condensation (RCC1) repeat 332 380 IPR000408 -
Pste8g00674 1109 Pfam Regulator of chromosome condensation (RCC1) repeat 383 435 IPR000408 -
Pste8g00674 1109 Pfam Regulator of chromosome condensation (RCC1) repeat 553 602 IPR000408 -
Pste8g00674 1109 Pfam Regulator of chromosome condensation (RCC1) repeat 502 550 IPR000408 -
Pste8g00674 1109 Pfam Regulator of chromosome condensation (RCC1) repeat 607 654 IPR000408 -
Pste8g00674 1109 SUPERFAMILY FYVE/PHD zinc finger 658 729 IPR011011 -
Pste8g00674 1109 Pfam FYVE zinc finger 658 724 IPR000306 GO:0046872
Pste8g00674 1109 MobiDBLite consensus disorder prediction 730 756 - -
Pste8g00674 1109 Gene3D - 250 500 IPR009091 -
Pste8g00674 1109 Gene3D - 501 668 IPR009091 -
Pste8g00674 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 384 438 IPR000408 -
Pste8g00674 1109 FunFam Putative E3 ubiquitin-protein ligase HERC1 664 732 - -
Pste8g00674 1109 SMART fyve_4 656 725 IPR000306 GO:0046872
Pste8g00674 1109 Gene3D - 23 140 IPR011993 -
Pste8g00674 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 606 657 IPR000408 -
Pste8g00674 1109 MobiDBLite consensus disorder prediction 140 194 - -
Pste8g00674 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 332 383 IPR000408 -
Pste8g00674 1109 FunFam PH, RCC1 and FYVE domains-containing protein 1 493 663 - -
Pste8g00674 1109 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 669 731 IPR013083 -
Pste8g00674 1109 MobiDBLite consensus disorder prediction 770 805 - -
Pste8g00674 1109 Pfam Pleckstrin homology domain 25 131 IPR001849 -
Pste8g00674 1109 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 503 553 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00674 Pste-Chr8 3508876 3516774 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00674 928 1100 Major Intrinsic Protein MIP AT1G31880 33.155 1.96e-17 83.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g00674 8 3508876 3516774 Pste8g00674 8 3508876 3516774 ECH