Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00658 CTTTTCTCCGTGTGTCTCTCTCTAGAGGAAAAAAAAAGGGCTAACAAAAAGACTCTCTCTCCCCCTTTCATCTGCATACCATCGTCGTTTAATCCCAATCGCTTCGTCGTTTTACTCTCTAAATCGGAATTTACCACCCGCCGCCGCCGCCTCTTCCGGCGAATCTCTCCTCTGCCGCTCCATCATTTGAATCTCGCTCCACCGTGATTCCTCCTACACCAACCGATTATCGTGTCCTTTTTTTCTCTCTCTTTTGTTTCGATATTTGCAGCCGGCGATTCCGTATCCGGCGAGTCCTTGTCGGACGAAGAGTGCGCACGATTATTAACCCGTGCACCATCGCGCGTCGCGGTTACTTCCGTTCGAACCAAATTGCCGGAACTCTGTTCCGCTCTCTGCACGTGGAAAGGTCGGGCGTTTTCCGTGCGATGTCGCGTTCTCCAAGCCTTAAGGGTTTTAGTGACGAGCTTCGTCGAGTTTACTTCTCGATCCGTTGCTTTCTCCCTTTCGATTCGGATGGCTTTCTTTAGGAACTTTTCAAATGATACAGTTTCACATGGTGTCATGGAAGATAAAAGCCAAGGGCAGAATGCTAATAGAGTTCATAGATCAGTAGGTAATGAATGTACTGATGCAACTTCTAGTGAGAAAGAATTTGATATGAACATGGAGGCACAGTATGAGAGTGATGGCGAACCAGATGGTTCCAGTAGGTTGCAAACTGAGGCAGCAGCTAATGATGGAAATACTGTCAAAGAATCAAACTTGCAGACTACAGGAAATAAAACAGCTATGATGGGAAGGTGGGGTTCAACATTTTGGAAGGACTATGGGCAAATGGGCACCCAAAATGGTTCTGAATCTGGGCAAGAGTCAAAAAGTGGATCAGATTATAGAAATGCAGATGGGTCTGAAGATAATTCATTGGATGGAAGAGCGGGAAGATTAGACTCAGATGATGATGATGGACAAAAGGAGGCAGGAAAAGGTCCTAGAGGTAACTCTGATGTTCCTGCTGAAGAGATGTTGTCTGATGAGTATTATGAGCAGGATGGGGAAGAACAAAGTGACTCATTGCATTATGGTGGGATGAAAAAGTCCACTGGATCAAATTCATGGCCACAACGAATATCGACCAGTGGAAATAGAACTTTGCATAGGAATTCAAGGTTTTTAGATGATGCTGAAGATAACGATGGTGAGGATGAGGATGATGATGATGGTGATAATGATAATGATGGTGATGATGCTGATTATGAAGAAGAGGATGAAGCAGATGAAGATGATCCTGATGATGCAGACTTTGAGCCCGCAACAAGTGGTCATGCTGGCAACAAGGATAAAGATTGGGAAGGTGAAGGCTCGGATGAAGATGATGACAGTGACGGAAATATAGGTGCCTCAGATGATGATGATGAGTCTTTCTATGCTAAAAGACCTAAAGGAAGGCAACGGGGTAAGATCGGACTAAACACAAAATCTACCAGAGATCGCAAAGTGTATGCTGCATCTGGTCGGCAAAGAAGAGTTAAATCATCTTTTGAGGACAATGAGTCAACAACAGAGGATTCTGAGAGTGATAGCGATGAGGATTTCAAAAGCACAAAAAAGAGGAGTATTCATGTCCGCAAGAATAATGGTCGCTCTTCTGCAGCCACAGGTTTTTCTACGCGCAACAGTGAGGTTCGCACTTCTAGTAGGACAGTTAGGAAGGTATCATATGTTGAAAGTGAAGAAAGTGAAGAAGCTGATGAAGGGAAGAAGAAAAAGTCCCAAAAGGAAGAAATTGAAGAGGACGATGGTGACTCCATTGAAAAGGTCCTCTGGCATCAGCCAAAGGGCACGGCTGATGATGCTCAAAGGAATAATAGATCAACAGAGCCTGTTTTAATGAGTCACTTGTTTGATTCTGAAATTGATTGGAATGAGATCGAATTTTTGATAAAATGGAAAGGGCAGTCACATTTGCACTGTCAGTGGAAGTCTTTTGCAGAGCTGCAAAACGTCAGTGGTTTCAAGAAGGTTTTGAATTATACAAAGAAAATAATGGAAGACATCAGATACAGGAAGACAATCTCGAGAGAGGAGATTGAGGTCAATGATGTTAGTAAGGAGATGGATTTAGATATTATCAAACAGAACAGTCAGGTGGAAAGAATAATTGCAGATAGGATTAGCAAAGATAATTCTGCCAATATTATTCCAGAATACTTGGTCAAGTGGCAAGGACTATCATATGCTGAAGCGACTTGGGAAAAGGACATTGATATTGCTTTTGCTCAACATGCTATCGATGAGTTTAAGGCTCGTGAGGCTGCTATGGCAGTTCAAGGGAAGATGGTAGATTCTCAGCGTAAGAAGAGCAAAGCAAGTTTGCGGAAGCTTGAGGAACAACCTGAATGGTTGAAGGGTGGAAAGCTTCGTGATTATCAACTTGAGGGTCTGAATTTTCTCGTTAACAGTTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGCCTTGGAAAAACTGTACAGTCGGTATCAATGCTTGGTTTCCTACAGAATGCCCAGCAAATCCATGGTCCTTTTCTAGTAGTTGTTCCATTGTCCACTTTATCTAATTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATTATCATATATGTTGGTACTCGGGCAAGTCGAGAGGTTTGTCAACAATATGAATTTTATAATGATAAAAAACCTGGGAAGCCAATAAAGTTCAACGCACTGTTGACTACATATGAAGTAGTTTTGAAGGATAAGGCTGTCCTCTCCAAAATCAAATGGAATTATCTGATGGTGGATGAGGCACATAGGCTAAAAAATAGTGAGGCACAGTTGTATACAACACTTTCAGAATTTAGCACCAAGAACAAGTTGCTTATTACTGGTACTCCTCTACAGAACAGTGTGGAAGAACTATGGGCTTTGCTTCATTTCCTTGATCCTGACAAGTTCAGGAGCAAGGATGAATTTGTTCAAAACTATAAGAATCTGAGTTCTTTTAATGAGAATGAGCTAGCAAATTTGCATATGGAATTGAGGCCTCACATACTTCGAAGAGTTATTAAAGACGTGGAGAAATCATTACCCCCAAAAATTGAGCGTATCCTTAGGGTTGAAATGTCTCCTCTTCAGAAACAGTATTATAAATGGATTTTGGAACGCAATTTTCACAATTTGAACAAAGGTGTTCGTGGGAATCAGGTTTCTCTTTTAAATATTGTGGTGGAATTAAAGAAGTGCTGCAACCATCCCTTCTTGTTTGAAAGTGCTGACCATGGCTATGGTGGGGACTCGGGAAGTAGTGACAACAGTAAATTAGAGAGAATTGTTTTTAGCAGTGGCAAGCTTGTGATACTTGATAAGCTGCTTGTTAGATTGCATGAAACCAAGCACCGTGTTTTGATATTCTCTCAGATGGTTAGGATGTTGGATATACTGGGAGAGTATATGTCACTTCGAGGGTTTCAATTTCAGAGGCTTGATGGCAGTACAAAAGCTGAGTTGCGACAGCAGGCAATGGATCATTTCAATGCACCTGGGAGTGATGATTTTTGCTTCCTTCTTTCAACACGGGCAGGAGGTTTGGGTATCAACCTTGCCACGGCAGACACTGTTATAATATTTGATTCTGATTGGAATCCTCAAAATGACCTGCAGGCAATGAGCAGAGCTCATAGAATTGGGCAACAAGAGGTTGTTAACATATATAGGTTTGTGACAAGCAAAAGTGTTGAGGAAGATATTCTGGAACGTGCTAAGAAGAAAATGGTTCTGGACCACTTGGTGATTCAAAAACTAAATGCAGAGGGTAGACTGGAGAAGAAAGAAGCCAAAAAAGGAGGAAGTTATTTTGACAAGAATGAGCTGTCTGCAATCTTACGATTTGGAGCAGAGGAGCTTTTCAAGGAAGATAGAAATGATGAGGAAAGCAAGAAACGACTCTTAAGTCTGGATATAGATGAGATTCTGGAAAGAGCAGAGAAGGTTGAAGAGAAGGAAGCAAGTGAGGAACAAGGGCATGAGTTATTAAGTGCCTTTAAGGCAAGATATGCAGACAGTACTGTTGCCAATTTTTGCAATGACGAAGATGATGGAAGTTTCTGGAGCCGTTGGATAAAGCCTGATGCTGTATTTCAAGCAGAGGATGCTCTTGCTCCTCGATCTGCTCGAAATATTAAAAGCTATGCAGAGGTTGAGCCACCTGAAAGAAGCAATAAAAGAAAAAAGAAGGAACCTGAACCACCTGAACGAGTTCAGAAACGCCGGAAAGCAGAGCAATCTGCTCCTGCAGTACCAATGATTGAGGGAGCATCTGCCCAAGTGAGGAATTGGTCATATGGGAATTTATCTAAAAGAGATGCACTGCGTTTTTCTCGTTCAGTTATGAAATATGGCAATGAGAGTCAAATTGACTTAATTGTTACTGAGGTTGGTGGTGCTGTTGTGGCCGCTCCACCTGGAGCACAGATTGAACTTTTCAATGCTCTTATTGATGGTTGTACAGAAGCAGTGGAATTTGGAACTCTGGATGTAAAGGGGCCTTTGCTGGATTTTTTTGGTGTCCCAGTGAAGGCAAATGATATACTTACCCGTGTCCAACAACTTCAACTTCTGGCAAAGCGCATAGGTCGATATGAAGATCCTATTGCACAATTTCGCGTTCTGTCATATCTCAAACCATCAAACTGGTCCAAAGGTTGTGGATGGAATCAAATTGATGATGCTCGATTGCTTCTTGGAATATATTACCATGGGTTTGGTAATTGGGAGAAGATAAGACTAGATGAAAGACTTGGCCTGTCGAAAAAAATTGCACCTGTAGAACTTCAACACCATGAAACTTTCTTACCACGAGCTCCAAATTTGAAAGACCGTGCTAATGCCCTTTTGGAACAAGAACTTGCGGTTCTTGGTGTGAAAAATGCCAATAGCAGAGTTGGACGTAAACCTTCCAAGAAAGAGAGAGAAAATATGATTAACATCTCTCAGTCACGGGTGCAGGAGAAAAAGAAAAAACAAGGTTCTGTTAATGTCCAAATGAGAAAGGATAGATTTCAGAAACCCCTGAAGGTTGAATCTATAGTAAAGGAAGAGGGTGAAATGTCTGACAATGAAGAAGTATATGAGCAGTTCAAGGAGGTAAAATGGATGGAATGGTGCCAAGATGTGATGGTTGAAGAAATGAAAACATTGAAACGTCTTCACAGGTTGCAGCAAACTAGTGCCAATCTCCCAAAGGAAAAGGTGCTTTCGAAAATACGCAACTATTTACAACTTCTTGGGCGAAGGATAGATCAAATTGTGCTAGATCATGAACAGGAACCCTATAAGCAAGATAGAATGACTGTCCGACTGTGGAAATATGTTTCCACCTTTTCCCATCTTTCAGGGGAGAGGCTACATCAAATATATTCCAAACTTAGACAGGAGCAGGATGAGGCAGGTGTTGGTCCCTCTCATGTCAATGGGTCGGTATCTGTTCCATTTAGCAGAAATGGAAACCCATTCCGTCGCCATATGGAGAGGCAAAGAGGATTAAAAAATTTGACTACCTATCAAATGCCAGAACCAGTTGATAATTCTGGGAAATCTGAGGCATGGAAACGAAGAAGAAGAGCTGAAAGTGATAATCATTTCCAGGGTCAGCCACCACCACCTCAAAGGACTGTAAGTAATGGAATCCGGATTACTGATCCCAACTCACTTGGGATCTTAGGTGCTGGGCCATCAGACAAACGCTTTGCTAGTGAAAAACCTTATAGGACACAACCTGGTGGGTTTCCTTCTAGACAAGGCTTCTCTTCAGGTATAAAGTAACTGGCTTGGTGGGATTAGAATGGCTGATTATTAGAGTGTTGGCGGTTGTCTTTCACTCTGAATTTATACTGCTTCAGCTATTGTACATTCTGTGGAATTTTTTTCTTCCACCCATGGGAATAAGATCTTGCGGATCCCTTTTTGGTGTCTCTTGGCGGATATGAGAAATATCCCTACACTGGGATTCACATCCCTCTGAACAGGATGGCTGAAGCCGAAAAGATCTAATGCAAGATGAAAAATTAGTCTTGCCAATTGTTTCTTTTTCCCTTTCGATTTCTACCTCTTCTTTGAAGATGACCGAGCAAAGTGACATGGCGAAAATCTTGAAAAGCGAAGAGTTTTACCCACTTGCTATAGACATACTTAGGAAAGTGTACATTGTCAATTCTGCAATTTTATTGGATTTTACTGCTCACTCCATAAAGTATGTTTAGCTAATGTAGACAAAAATGTATTTGATTTTGGTGGTAATTATAACTATAATTTCCAAGATTTTGTAGCTCTTTCAAGTGAGTTTCATTAGTGAAATAGTAAATGAAGTGATTTCTCAGCTTCTTGCCAAGTTTACTTTCATTTCATTAAAATTTTCCTTTTCCAGTAATTTCATAGAATATGCATGTACCCAGAATCTGAGGTATTGTCCCAGC 6494 0.4139 MAFFRNFSNDTVSHGVMEDKSQGQNANRVHRSVGNECTDATSSEKEFDMNMEAQYESDGEPDGSSRLQTEAAANDGNTVKESNLQTTGNKTAMMGRWGSTFWKDYGQMGTQNGSESGQESKSGSDYRNADGSEDNSLDGRAGRLDSDDDDGQKEAGKGPRGNSDVPAEEMLSDEYYEQDGEEQSDSLHYGGMKKSTGSNSWPQRISTSGNRTLHRNSRFLDDAEDNDGEDEDDDDGDNDNDGDDADYEEEDEADEDDPDDADFEPATSGHAGNKDKDWEGEGSDEDDDSDGNIGASDDDDESFYAKRPKGRQRGKIGLNTKSTRDRKVYAASGRQRRVKSSFEDNESTTEDSESDSDEDFKSTKKRSIHVRKNNGRSSAATGFSTRNSEVRTSSRTVRKVSYVESEESEEADEGKKKKSQKEEIEEDDGDSIEKVLWHQPKGTADDAQRNNRSTEPVLMSHLFDSEIDWNEIEFLIKWKGQSHLHCQWKSFAELQNVSGFKKVLNYTKKIMEDIRYRKTISREEIEVNDVSKEMDLDIIKQNSQVERIIADRISKDNSANIIPEYLVKWQGLSYAEATWEKDIDIAFAQHAIDEFKAREAAMAVQGKMVDSQRKKSKASLRKLEEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIIYVGTRASREVCQQYEFYNDKKPGKPIKFNALLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDPDKFRSKDEFVQNYKNLSSFNENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGSSDNSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILGEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGSYFDKNELSAILRFGAEELFKEDRNDEESKKRLLSLDIDEILERAEKVEEKEASEEQGHELLSAFKARYADSTVANFCNDEDDGSFWSRWIKPDAVFQAEDALAPRSARNIKSYAEVEPPERSNKRKKKEPEPPERVQKRRKAEQSAPAVPMIEGASAQVRNWSYGNLSKRDALRFSRSVMKYGNESQIDLIVTEVGGAVVAAPPGAQIELFNALIDGCTEAVEFGTLDVKGPLLDFFGVPVKANDILTRVQQLQLLAKRIGRYEDPIAQFRVLSYLKPSNWSKGCGWNQIDDARLLLGIYYHGFGNWEKIRLDERLGLSKKIAPVELQHHETFLPRAPNLKDRANALLEQELAVLGVKNANSRVGRKPSKKERENMINISQSRVQEKKKKQGSVNVQMRKDRFQKPLKVESIVKEEGEMSDNEEVYEQFKEVKWMEWCQDVMVEEMKTLKRLHRLQQTSANLPKEKVLSKIRNYLQLLGRRIDQIVLDHEQEPYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLRQEQDEAGVGPSHVNGSVSVPFSRNGNPFRRHMERQRGLKNLTTYQMPEPVDNSGKSEAWKRRRRAESDNHFQGQPPPPQRTVSNGIRITDPNSLGILGAGPSDKRFASEKPYRTQPGGFPSRQGFSSGIK 1775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00658 1775 MobiDBLite consensus disorder prediction 61 92 - -
Pste8g00658 1775 Gene3D - 626 865 IPR038718 -
Pste8g00658 1775 MobiDBLite consensus disorder prediction 318 346 - -
Pste8g00658 1775 FunFam protein CHROMATIN REMODELING 5 isoform X2 545 597 - -
Pste8g00658 1775 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 647 819 IPR014001 -
Pste8g00658 1775 MobiDBLite consensus disorder prediction 1699 1714 - -
Pste8g00658 1775 CDD CD1_tandem 428 508 - -
Pste8g00658 1775 MobiDBLite consensus disorder prediction 1228 1267 - -
Pste8g00658 1775 SMART chromo_7 541 600 IPR000953 -
Pste8g00658 1775 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 622 856 IPR027417 -
Pste8g00658 1775 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 955 1106 IPR001650 -
Pste8g00658 1775 Pfam Domain of unknown function (DUF4208) 1551 1643 IPR025260 -
Pste8g00658 1775 Gene3D - 866 1096 IPR027417 -
Pste8g00658 1775 SMART helicmild6 981 1065 IPR001650 -
Pste8g00658 1775 MobiDBLite consensus disorder prediction 373 399 - -
Pste8g00658 1775 FunFam Photoperiod-independent early flowering 1 605 879 - -
Pste8g00658 1775 MobiDBLite consensus disorder prediction 189 214 - -
Pste8g00658 1775 ProSiteProfiles Chromo and chromo shadow domain profile. 543 607 IPR000953 -
Pste8g00658 1775 MobiDBLite consensus disorder prediction 1 92 - -
Pste8g00658 1775 Pfam SNF2-related domain 654 923 IPR000330 GO:0005524|GO:0140658
Pste8g00658 1775 SUPERFAMILY Chromo domain-like 427 510 IPR016197 -
Pste8g00658 1775 MobiDBLite consensus disorder prediction 104 433 - -
Pste8g00658 1775 MobiDBLite consensus disorder prediction 1717 1735 - -
Pste8g00658 1775 MobiDBLite consensus disorder prediction 223 262 - -
Pste8g00658 1775 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 866 1096 - -
Pste8g00658 1775 CDD SF2_C_SNF 941 1076 - -
Pste8g00658 1775 FunFam Chromo domain-containing protein 1 418 543 - -
Pste8g00658 1775 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 133 1689 - -
Pste8g00658 1775 Coils Coil 1095 1115 - -
Pste8g00658 1775 MobiDBLite consensus disorder prediction 126 157 - -
Pste8g00658 1775 CDD CD2_tandem 541 597 - -
Pste8g00658 1775 SUPERFAMILY Chromo domain-like 522 598 IPR016197 -
Pste8g00658 1775 Gene3D - 415 543 - -
Pste8g00658 1775 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 859 1140 IPR027417 -
Pste8g00658 1775 Gene3D - 545 597 - -
Pste8g00658 1775 MobiDBLite consensus disorder prediction 1651 1775 - -
Pste8g00658 1775 MobiDBLite consensus disorder prediction 1233 1261 - -
Pste8g00658 1775 ProSiteProfiles Chromo and chromo shadow domain profile. 430 518 IPR000953 -
Pste8g00658 1775 SMART DUF4208_2 1539 1644 IPR025260 -
Pste8g00658 1775 MobiDBLite consensus disorder prediction 400 433 - -
Pste8g00658 1775 Coils Coil 1149 1169 - -
Pste8g00658 1775 Pfam Helicase conserved C-terminal domain 952 1065 IPR001650 -
Pste8g00658 1775 Pfam Chromo (CHRromatin Organisation MOdifier) domain 544 598 IPR023780 -
Pste8g00658 1775 MobiDBLite consensus disorder prediction 104 125 - -
Pste8g00658 1775 Gene3D - 1369 1483 - -
Pste8g00658 1775 SMART ultradead3 631 831 IPR014001 -
Pste8g00658 1775 MobiDBLite consensus disorder prediction 280 297 - -
Pste8g00658 1775 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00658 Pste-Chr8 3458414 3478322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00658 657 1092 RAD5 or RAD16-like Gene Family AT1G02670 25.992 4.15e-35 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pste8g00658 SNF2_N 1.5e-64 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g00658 8 3458414 3478322 Pste8g00658 8 3458414 3478322 ECH