Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00652 TTCACAACATTGCAAGCTGCAGCAAACCCCTTCAACATTTTTATCCCCAGAATTCATATCATGAGTTTTCATGATACATCAAACACTGGTCTTCGACTTGGACTTGGTCTTGGTCTTGGTCTTGGTAGCTTCCATGATCAATCAGAGAATTGCATGAAGATCAGTGATGACCCTTTGAGAGAAAGCCATAAGATAAAAAAGGTGGAGAATCCTTCAAAATATAACAAAACATACCCTTCACTCACATTAGGACCACCAGATGATGATGAAGAAGAAGTGAATAATCAACAAACTTCAAAGACTGAGTCCTATGAATATTTTCGTCCCCAAGTTTCTTCTCCAAGCGCAGTTTCTTCATTTTCTAACTCTTCTAGCATCAAGAGGGAGCGAGATCAGGTGTTGGGAGAAGAATTTGAAGTAGAAGTAGAGAAAGTTCCAACAAGGGTAGGTGATGTTGATGAAGATGGTAACCCCAGAAAAAAACTTAGGCTCACAAAAGAACAAGCCGCAGTCTTGGAAGAAAACTTCAGAGAGCATTCTACCCTCAACCCGAAGCAGAAGCAAGAGTTGGCAATGAAGCTGAATCTGCGAGCGAGACAAGTAGAGGTGTGGTTTCAGAATAGGAGAGCCAGGACAAAGCTAAAGCAAACTGAATCAGATTGTGAACTACTAAAGAAGTGTTGCGACTCACTAACAGAAGAAAATAAGAGGCTGCAAAAGGAACTGCAGGAACTAAAGTCAATGCAAACAAGTTCAGTGCCCCTTTATATGCAGATTCCAGCAGCCACACTTTCCATATGCCCTTCGTGTGAGAGAATCTGTGGTGGCAACAGTGATAGTGGCAACAATGGCTCTTCACACACGACAACGTTGCTTATTGGCTCAAAGACACATCATCATCCCTTTTACAAAAGTAACTATCCATTTCCTCACTCTTCATCAGCAGCATGCTAGCTCCCAGGATTGTGCTTTAGTGATCATAAATATTTGTACCAATATATTAATTATGTAGTTTATTAGCATGTAATTAAAGATATATATATATAGCTTATTAGTGATTACTAGAGAGATCCATCCCAACACTTTCTTATAATGCACGTCGTTATATATATATACACCTCCAAAATCGAAAGATCAATTCATAGAGAATTTTCTAATTTGTTGTAATTTAATTATGTGTAACATATTGATTTATAAATACATTATGAATTACGGAATAAGGAT 1224 0.3824 MSFHDTSNTGLRLGLGLGLGLGSFHDQSENCMKISDDPLRESHKIKKVENPSKYNKTYPSLTLGPPDDDEEEVNNQQTSKTESYEYFRPQVSSPSAVSSFSNSSSIKRERDQVLGEEFEVEVEKVPTRVGDVDEDGNPRKKLRLTKEQAAVLEENFREHSTLNPKQKQELAMKLNLRARQVEVWFQNRRARTKLKQTESDCELLKKCCDSLTEENKRLQKELQELKSMQTSSVPLYMQIPAATLSICPSCERICGGNSDSGNNGSSHTTTLLIGSKTHHHPFYKSNYPFPHSSSAAC 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00652 297 CDD homeodomain 138 196 IPR001356 GO:0003677
Pste8g00652 297 MobiDBLite consensus disorder prediction 42 82 - -
Pste8g00652 297 SMART HOX_1 137 199 IPR001356 GO:0003677
Pste8g00652 297 Pfam Homeobox associated leucine zipper 195 228 IPR003106 GO:0006355|GO:0043565
Pste8g00652 297 Coils Coil 194 231 - -
Pste8g00652 297 ProSiteProfiles 'Homeobox' domain profile. 135 195 IPR001356 GO:0003677
Pste8g00652 297 ProSitePatterns 'Homeobox' domain signature. 170 193 IPR017970 GO:0000981|GO:0006355
Pste8g00652 297 Gene3D - 131 201 - -
Pste8g00652 297 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 14 267 - -
Pste8g00652 297 Pfam Homeodomain 139 193 IPR001356 GO:0003677
Pste8g00652 297 SMART halz 195 238 IPR003106 GO:0006355|GO:0043565
Pste8g00652 297 SUPERFAMILY Homeodomain-like 134 196 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00652 Pste-Chr8 3396417 3398946 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00652 1 253 Homeobox Transcription Factor Family AT4G37790 48.473 2.09e-61 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Pste8g00652 Homeodomain 3e-17 CL0123