Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00641 TTATTACCAGTGACTGTGCATTATTGTTGTTGTTGAGTGTTGAGTAACATAGCCATTACCCATTAGCCATATCTCTCTTTTTCACACATCGCATTCTCTGAGTCTACTACTGAAATCCACATGAATGTCACTCTCACTTCGCTCGCCTCTCACCCCCAATCCCTCTAATTCCACTGTTCACCTCCATTTCGGTGAGATCTGAGAAGCTAGGGTTTGAACTTCAGGTTCCCAATTAGGGTTGGATTCCATCGTGTTATGAGAACCAGGAGCTTCGGATGTTGCATTGGAAGTGCCTTTGGATGGTACTCGCCTCAGTTTTTGGTGGGTGGTGGGCTACTTAATAGGATCATTTCTGATTCAAAGGGACATGCAATAATGCTTTTATTCAACTTCCGCTGCTTCACTTTTTTCTAGTCTCCAACTTCACCTGTTACTATACCTCCAACCATGAAGCTCTCTTCCTCCTCCGGATTTAATCCACCGGCTGAAGAAGAAGGGGAGAAGAAATGTTTGAATTCTGAACTTTGGCATGCATGTGCTGGTCCTTTGGTTTCTCTGCCTCCTGTTGGAAGTCGTGTAGTCTACTTTCCCCAAGGTCACAGTGAGCAGCAAGAGCAAAAGGAGGTATATCTGTTGCCTGCTGAATTGGGCACTCCCAGCAAGCAACCAACCAACTACTTCTGCAAAACATTAACTGCAAGTGATACCAGCACACATGGAGGATTTTCTGTTCCTCGAAGAGCAGCTGAAAAAGTCTTCCCTCCTCTTGATTACTCACAGCAGCCTCCTGCTCAAGAACTAATTGCCAGAGATCTTCATGATAATGAATGGAAATTTAGACACATATTTCGAGGTCAACCCAAAAGGCATCTTCTTACTACAGGGAATGAAAAAAATCAATTGCTCTTGGGTATACGACGAGCAAATCGTCCACAGACTATCATGCCATCATCAGTTCTGTCAAGTGATAGCATGCACATTGGTCTTCTTGCTGCTGCAGCTCATGCAGCTGCTACAAACAGTCGCTTTACTATATTCTATAATCCTAGGGCAAGCCCTTCTGAATTTGTCATTCCTTTAGCCAAGTATGTTAAAGCTGTGTATCATACACGAGTTTCGGTTGGCATGCGATTTAGGATGCTCTTTGAGACAGAAGAATCAAGTGTTCGGCGATACATGGGTACCATAACTGGTATTAGTGATTTAGATCCGGTCCGCTGGCCAAATTCACACTGGCGTTCTGTGAAGGTTGGCTGGGATGAGTCCACTGCAGGGGAGAGGCAGCCAAGAGTCTCCTTGTGGGAGATTGAACCTTTGACAACATTTCCAATGTATCCATCTCCATTCCCCTTAAGGTTGAGGCGTCCTTGGCCATCAGGCTTACCTTCTTTATATGGTCTTAAGGATGGAGACATGGGCATCACTTCTCCATTCATGTGGCTCCAAGGTGGGCTTGGGGATCAAGGAATGCAATCTTTGAACTTCCAGGGGCTTGGTGTTACACCATGGATGCAACCTAGACTTGATGCTTCTATACCAGGTCTCCAACCAGAGTTATACCAAGCAATGACTTCTTCTGCATTCCAGGAAGTGAGGACAATGGATCCGTCAAAATCTTCACAATCTCTGTTGCAGTTTCAGCAGACCTCAAATGTTCCCAGTGCTCATACTTCTGAGATACAGAGGCAAGTATTACCACAGTCGCAGCCTCAAAACACCCTTCTACAAAGTTTTCAGGAAAACCATGTTCCTGCTCAGTCACAACCTCTGCAACAGCAGTTGCATCGTTACCATCCATATAGTGATCAGCGTCAACAGCAGCAGCAACTTAAAAACTTGCCTGTTCAGCAGCAGTTACCAAATGTCATCTCTCCTTTGTCTAATTTTGCATCAGGTACCCAGTCTCAATCTCCTCCTATGCAAGCCCTAGCTTCACATTGCCAGCAGCAGAGCTTTCCTGAACCTATCAGGAATCATATTTCTGGTTCTGATGTTTCCCCTATCCAGAGTCTACTAGGTTCATTCTCCCACGATGGAACATCCCAGTTACTTAACTTGAATGGATCCAATTCCGTTATATCTTCTGGAGCCATACTACCCAAGCAAATAACTGTTGAACCTCAGGTTCCATCTGCTGCTACACAGTGCGTATTGCCTCAGGTGGAAAACTTGGGAACATCACAATCAAGTGTGTCTGAATTTGCTGCTTTGCCTCCATTTCCTGGAAGAGAACATTCTGCATACCATGGTGCTGCTGATCCTCAGAGCAATCTTTTATTTGGGATTAACATTGATCCCTCTTCTCTCATGCTGCAAAATGGCATGTCAAACCTGAGAAATATAGCCAATGTGAATGATTCATTATCATTGCCATTTTCTGCTTCAAATTGTGGTGGTGCTACAGGCACTGATTTCCCCTTAAGTTCTAACATGACAACTTCAAGTTGTGTGGGGGAATCAGGCTTCTTGCAGTCTTCTGAAAATGTAGACCAAGCAAATACACCAACTGGAACCTTTGTTAAGGTTCACAAGTCAGGGTCCTTTGGCAGGTCACTGGACATTTCTAAGTTCAGCAGCTATGATGAGCTGCGTAGTGAGCTGGCTCGCATGTTTGGCCTTGAAGGCCAACTAGAGGACCCTAAGACTCAGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGATGTTCTTCTTCTTGGTGATGATCCTTGGCAGGAGTTTGTGAACAATGTATGGTACATAAAAATACTATCTCCACTAGAAGTGCAACAAATGGGCAAAGGTCTTAGCCCTTCTCCTTCTGCCCCATGTCAGAAACTTTCTACTTCTGGCAACTCTTGTGATAATTATGCGAGTCAACAAGAGTTGAGAGGTTCAAGAAATGACCATAGTTGCTGTGGTGCTACGTCGGCTGTGGCGCTCTCTGAAACTGATTGTAACGGTTTGTTGATGTTGAAAACATTGAAATCCCCCATCCATGTGGGTCGAAGTCGAACGCTACTTGTTTGCTTCAAAACCCCTTCTTTCCCACTATGCACCACTGCCCCTGAAAATAATTTCCATGGCACAGAGACCCAGTGGGAGACATTGCTCAAACCCTTTGATCTGAAACAGCTTAGAAGGTCTCTTACCCCAATTAGCCCTTCTCAGCTTTGTAAATTGTTGCAGCTCCCTCTTGACATTCCCACTTCAATGGACTTGTTTCAAAGGGCTAGTGCCCAAAAGGGGTATTGCCACACCTTTGATGCCTACTATCTCTTAATTCATAAGCTTGGAGCCGTGGGGGACTTCAAAATTGTAGAAAAGTTGTTGAAGCAAATGAAAGATGAAGGACTTGTGTTTAAGGAATCACTATTTATAATGATTATCAAGTATTATGGGAAAGCTGGATTGCCTGGGCAAGCAACTAGGCTTTTGTTAGACATGTGGGGTGTTTATTCTTGTTACCCCACATTTAAGTCTTACAATGCTGTGTTGGAAATTCTGGTTGATGGAAATTGTCCCAGGCTGGCACCTAATGTTTTCTATGACATGTTGAGTAGAGGTATTTCTCCCACCGTCTATACCTTTGGGGTGGTTATGAAAGCCTTGTGTATGGTTAATGAGGTTGATTCCGCTTGCTCGCTTCTCAGGGACATGCCCAAGCACTCCTGTGTTCCAAATTCGGTTATTTATCAGACCCTGATTCATGCTCTTTGCGAAACCAATAGAGTTAGTGAAGCCATGCGTCTTTTGGAGGACATGTTTCTGATGTGCTGTGAACCTGATGTCCAGACCTTCAATGATGTTATCCATGGCCTCTGCAGGGTCGGTCGGATTCACCAGGCAGCAAAGTTGCTTGATCGAATGCTCCTTCGAGGTTTCAGCACCAACCCTCTAACTTACGGATATTTGATGAATGGGTTGTGCAGAATGGGGCATGTTGATAAAGCAAGAGCCTTGCTGAACAAAATTCATAACCCCAATACTGTGCTCTATAATACACTCATTACTGGGTATGTTACAAGTTATGAGCCTGATGCCTACACTTTTAACATAATGATCGATGGACTAGTCAAGAAAGGGTATTTGGTCTCTGCTCTTGAATACTTCCATGAGATGGTAGCCAAAGGCTTTGAGCCAAATGTTATCACATACACCGTACTGATAAATGGTTTTTGCAAGCAAGGACGATTAGAGGAGGTTGCTGAAGTTGTGAATAGCATGTCAGCCAAGGGTCTGAATCTGAATACTGTGGGGTACAATTGCTTGATCTGTGCACTGTGCAAGAATGGGAATATTGAAGGAGCTTTACAACTGTTTGGTGAAATGCCAAGCAAAGGATGTAAACCTGACATTTATACATTTAATTCTTTAATATATGGTCTGTGCAAGAATGATAAGATCGAAGAAGCTTTGAAGGTATATCATGACATGTTCTTGGAGGGTGTTATTGCTAACACTGTAACGTACAACACATTGATTCATGCATTTCTTATTAGAGATTCAGTTCAACAGGCATTTAAGCTTGTTGATGAAATGCTATTTAGAGGGTGTCCTATGGACAATATTACATATAATGGCCTCATTAAAGCTTTCTGTAAAACTGGGGCAGTTGAAAAAGGATTGGGATTGTTTGAAGAAATGCTTGGGAAAGGGATTTTTCCTTCTATTATCTCTTGCAATATTGTGATCAGTGCCATGTGTAGAGTTGGAAAAGTAAATGATGCTCTAAAATTTCTTCGGGATATGATTCATCGTGGTTTGACGCCGGATATAGTCACTTATAACTGCCTGATCAATGGTCTTTGTAAGATGGGTCATGTTCAAGAGGCATTGAACCTTTTTAACAGGTTACAAGGTGAAGGAATTCGTCCAGATGCTATTACATACAACACACTGATCAGTAGGCACTGTCACGAGGGCATGTTCAATGATGCCTGTCTGCTTTTATATAAAGGTACAGATAACGGGTTCATTCCTAACGAAACCACTTGGTCTATACTGATAAATTATCTTGTAAAAAAATTACCGCGGGGAGCTAGACTTTCTAAGGATTATATGGTTGCTGCTTCAAGCCTTCAACCAACAGGGGGAGTAGATGCCCGGATTCCTAATTACCCTAGCTTGCCACCACAACTTATCTGCCAGCTTCACAATGTGACAATGCATAAGAATAAAATTAATAGTTTGGATCTGCAAAAACATTAACTGCACGTGATACCACCACCAGTTTTACATTCAAACATTGGATTTAATTATTATGTGCTTTCTCCATGTGTCCAAGAGAAGCTTGTGAAGGAAAACCCACCTGAAAGACTTTTTAAGTTCAAAGACAGCCACCACTATCCCTTCTTCTCCATGCCACATGCTCTCCACACTCAAAATTTTGTAGCTTAATCAGGAGAATTATTTTTATTTTTTTATAATTATGAAATATAATGGTCAAGAGGCATGATTTCGTGGCACTCATGTGACTTCTATAAGCCTTTTCTTTTCCTGTTCATGTATAATGTTTTTGGGCTCATGTACATTATGAATAGTGATGTTAACTTTTGTCTTGCTATTTCGGTTTTGACAACTAATTTTAATTGTTAGTTCATTATTATAGTAAAAAGTGTATAGAGTATTGACAGTTCATGAAAAAACTAATAAATACAATGTATTGGGATCTTATGG 5664 0.4232 MKLSSSSGFNPPAEEEGEKKCLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQQEQKEVYLLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGNEKNQLLLGIRRANRPQTIMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLRRPWPSGLPSLYGLKDGDMGITSPFMWLQGGLGDQGMQSLNFQGLGVTPWMQPRLDASIPGLQPELYQAMTSSAFQEVRTMDPSKSSQSLLQFQQTSNVPSAHTSEIQRQVLPQSQPQNTLLQSFQENHVPAQSQPLQQQLHRYHPYSDQRQQQQQLKNLPVQQQLPNVISPLSNFASGTQSQSPPMQALASHCQQQSFPEPIRNHISGSDVSPIQSLLGSFSHDGTSQLLNLNGSNSVISSGAILPKQITVEPQVPSAATQCVLPQVENLGTSQSSVSEFAALPPFPGREHSAYHGAADPQSNLLFGINIDPSSLMLQNGMSNLRNIANVNDSLSLPFSASNCGGATGTDFPLSSNMTTSSCVGESGFLQSSENVDQANTPTGTFVKVHKSGSFGRSLDISKFSSYDELRSELARMFGLEGQLEDPKTQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVWYIKILSPLEVQQMGKGLSPSPSAPCQKLSTSGNSCDNYASQQELRGSRNDHSCCGATSAVALSETDCNGLLMLKTLKSPIHVGRSRTLLVCFKTPSFPLCTTAPENNFHGTETQWETLLKPFDLKQLRRSLTPISPSQLCKLLQLPLDIPTSMDLFQRASAQKGYCHTFDAYYLLIHKLGAVGDFKIVEKLLKQMKDEGLVFKESLFIMIIKYYGKAGLPGQATRLLLDMWGVYSCYPTFKSYNAVLEILVDGNCPRLAPNVFYDMLSRGISPTVYTFGVVMKALCMVNEVDSACSLLRDMPKHSCVPNSVIYQTLIHALCETNRVSEAMRLLEDMFLMCCEPDVQTFNDVIHGLCRVGRIHQAAKLLDRMLLRGFSTNPLTYGYLMNGLCRMGHVDKARALLNKIHNPNTVLYNTLITGYVTSYEPDAYTFNIMIDGLVKKGYLVSALEYFHEMVAKGFEPNVITYTVLINGFCKQGRLEEVAEVVNSMSAKGLNLNTVGYNCLICALCKNGNIEGALQLFGEMPSKGCKPDIYTFNSLIYGLCKNDKIEEALKVYHDMFLEGVIANTVTYNTLIHAFLIRDSVQQAFKLVDEMLFRGCPMDNITYNGLIKAFCKTGAVEKGLGLFEEMLGKGIFPSIISCNIVISAMCRVGKVNDALKFLRDMIHRGLTPDIVTYNCLINGLCKMGHVQEALNLFNRLQGEGIRPDAITYNTLISRHCHEGMFNDACLLLYKGTDNGFIPNETTWSILINYLVKKLPRGARLSKDYMVAASSLQPTGGVDARIPNYPSLPPQLICQLHNVTMHKNKINSLDLQKH 1582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00641 1582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1403 1437 IPR002885 -
Pste8g00641 1582 SUPERFAMILY CAD & PB1 domains 681 764 - -
Pste8g00641 1582 Pfam PPR repeat 937 965 IPR002885 -
Pste8g00641 1582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1263 1297 IPR002885 -
Pste8g00641 1582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1074 1108 IPR002885 -
Pste8g00641 1582 Gene3D Tetratricopeptide repeat domain 1417 1525 IPR011990 GO:0005515
Pste8g00641 1582 Gene3D Tetratricopeptide repeat domain 1090 1188 IPR011990 GO:0005515
Pste8g00641 1582 Gene3D Tetratricopeptide repeat domain 883 997 IPR011990 GO:0005515
Pste8g00641 1582 Gene3D Tetratricopeptide repeat domain 1329 1416 IPR011990 GO:0005515
Pste8g00641 1582 Gene3D Tetratricopeptide repeat domain 998 1089 IPR011990 GO:0005515
Pste8g00641 1582 FunFam Auxin response factor 222 294 - -
Pste8g00641 1582 Gene3D - 684 779 - -
Pste8g00641 1582 Gene3D - 222 294 - -
Pste8g00641 1582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1039 1073 IPR002885 -
Pste8g00641 1582 Pfam AUX/IAA family 678 772 IPR033389 -
Pste8g00641 1582 Pfam PPR repeat 1140 1170 IPR002885 -
Pste8g00641 1582 SUPERFAMILY DNA-binding pseudobarrel domain 63 187 IPR015300 -
Pste8g00641 1582 Gene3D - 76 152 IPR015300 -
Pste8g00641 1582 SMART B3_2 78 173 IPR003340 GO:0003677
Pste8g00641 1582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1109 1143 IPR002885 -
Pste8g00641 1582 Pfam Auxin response factor 184 267 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pste8g00641 1582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1193 1227 IPR002885 -
Pste8g00641 1582 NCBIfam pentatricopeptide repeat 1405 1439 IPR002885 -
Pste8g00641 1582 NCBIfam pentatricopeptide repeat 1300 1333 IPR002885 -
Pste8g00641 1582 NCBIfam pentatricopeptide repeat 1007 1040 IPR002885 -
Pste8g00641 1582 NCBIfam pentatricopeptide repeat 1112 1143 IPR002885 -
Pste8g00641 1582 NCBIfam pentatricopeptide repeat 1230 1263 IPR002885 -
Pste8g00641 1582 NCBIfam pentatricopeptide repeat 1335 1368 IPR002885 -
Pste8g00641 1582 NCBIfam pentatricopeptide repeat 1195 1229 IPR002885 -
Pste8g00641 1582 NCBIfam pentatricopeptide repeat 1475 1508 IPR002885 -
Pste8g00641 1582 NCBIfam pentatricopeptide repeat 1370 1403 IPR002885 -
Pste8g00641 1582 NCBIfam pentatricopeptide repeat 1041 1075 IPR002885 -
Pste8g00641 1582 NCBIfam pentatricopeptide repeat 1076 1110 IPR002885 -
Pste8g00641 1582 NCBIfam pentatricopeptide repeat 1267 1299 IPR002885 -
Pste8g00641 1582 NCBIfam pentatricopeptide repeat 1440 1474 IPR002885 -
Pste8g00641 1582 NCBIfam pentatricopeptide repeat 1147 1172 IPR002885 -
Pste8g00641 1582 Pfam PPR repeat family 1192 1241 IPR002885 -
Pste8g00641 1582 Pfam PPR repeat family 1073 1122 IPR002885 -
Pste8g00641 1582 Pfam PPR repeat family 1402 1451 IPR002885 -
Pste8g00641 1582 Pfam PPR repeat family 1263 1311 IPR002885 -
Pste8g00641 1582 Pfam PPR repeat family 1472 1520 IPR002885 -
Pste8g00641 1582 Pfam PPR repeat family 1007 1051 IPR002885 -
Pste8g00641 1582 Pfam PPR repeat family 1333 1381 IPR002885 -
Pste8g00641 1582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1438 1472 IPR002885 -
Pste8g00641 1582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1368 1402 IPR002885 -
Pste8g00641 1582 Gene3D Tetratricopeptide repeat domain 1257 1327 IPR011990 GO:0005515
Pste8g00641 1582 Gene3D Tetratricopeptide repeat domain 1189 1256 IPR011990 GO:0005515
Pste8g00641 1582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1473 1507 IPR002885 -
Pste8g00641 1582 FunFam Auxin response factor 683 779 - -
Pste8g00641 1582 CDD B3_DNA 77 146 IPR003340 GO:0003677
Pste8g00641 1582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1333 1367 IPR002885 -
Pste8g00641 1582 Pfam B3 DNA binding domain 78 146 IPR003340 GO:0003677
Pste8g00641 1582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1144 1178 IPR002885 -
Pste8g00641 1582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1298 1332 IPR002885 -
Pste8g00641 1582 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 18 57 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pste8g00641 1582 MobiDBLite consensus disorder prediction 384 416 - -
Pste8g00641 1582 ProSiteProfiles PB1 domain profile. 688 774 IPR000270 GO:0005515
Pste8g00641 1582 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1228 1262 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00641 Pste-Chr8 3304023 3318273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00641 455 822 B3 DNA Binding Superfamily AT1G30330 51.429 1.98e-87 305
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pste8g00641 AUX_IAA 2.4e-08 CL0072