Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00634 AGTGGTTATGGGAAGAGCTCCTTGCTGTGACAAAGCAAACGTTAAGAGAGGACCATGGTCTCCAGAAGAAGATGCAACACTCAAAAGCTATGTAGAAACTCATGGCACTGGTGGAAATTGGATTGCATTGCCCAAAAAAGCTGGCCTTAGACGGTGTGGGAAGAGTTGCCGTCTACGGTGGCTCAATTATCTGAGGCCAGACATCAAACATGGAGGCTTTACAGAAGAAGAAGATAACATCATTTGCACCCTCTATGGTCAAATGGGAAGCAGGCAAGTTTTTCCAATATATATAACCATAATATGGTCTGCCATAGCCTCTCAACTTCGTGGCAGAACCGACAATGATGTGAAAAACTACTGGAACACGAAACTGAAGAAGAAGATCATGGCAGGAAAAGTTAGCCTCAAAACATTGACTGACAATGACACTCTTCCTTCAACTTCAACCCCATTACCAACCAACAAAAAATCCAAGACTCAAAATTCACCTTTCCCTGCTTCACAAAATCAAAATTCTCTACCCTCTCTGCTGCCAAACCTAGATGCTACTTCTGGATTATTCAGCATTAATAATGAAAAAAATATTATTAGTTTTGACCAAACTCACCATGATGGCTTCTGTAGTCCACAAGTCATGGATCATTATGTCTCACAAATTGGTGCAAGCTCAAGGATTATCAACAACAATAATAATAATAATAATCCGATGGTACCATTGTCCCAAGATGGTTCAAACAGCATTTCAGATTGGTGTTCAATTTTAATGAACAACAAGTGTGTGTCACAGACAGAAGATGCTAGTGATGAATCTATGGAA 820 0.4012 MGRAPCCDKANVKRGPWSPEEDATLKSYVETHGTGGNWIALPKKAGLRRCGKSCRLRWLNYLRPDIKHGGFTEEEDNIICTLYGQMGSRQVFPIYITIIWSAIASQLRGRTDNDVKNYWNTKLKKKIMAGKVSLKTLTDNDTLPSTSTPLPTNKKSKTQNSPFPASQNQNSLPSLLPNLDATSGLFSINNEKNIISFDQTHHDGFCSPQVMDHYVSQIGASSRIINNNNNNNNPMVPLSQDGSNSISDWCSILMNNKCVSQTEDASDESME 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00634 271 ProSiteProfiles Myb-like domain profile. 63 123 IPR001005 -
Pste8g00634 271 Pfam Myb-like DNA-binding domain 69 121 IPR001005 -
Pste8g00634 271 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Pste8g00634 271 CDD SANT 71 123 IPR001005 -
Pste8g00634 271 SMART sant 67 125 IPR001005 -
Pste8g00634 271 SMART sant 13 64 IPR001005 -
Pste8g00634 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Pste8g00634 271 MobiDBLite consensus disorder prediction 138 172 - -
Pste8g00634 271 Gene3D - 69 161 - -
Pste8g00634 271 SUPERFAMILY Homeodomain-like 11 119 IPR009057 -
Pste8g00634 271 CDD SANT 16 62 IPR001005 -
Pste8g00634 271 Gene3D - 7 68 - -
Pste8g00634 271 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Pste8g00634 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 127 IPR017930 -
Pste8g00634 271 FunFam Transcription factor RAX3 7 68 - -
Pste8g00634 271 PANTHER OS09G0431300 PROTEIN 1 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00634 Pste-Chr8 3278211 3281251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00634 1 129 MYB Transcription Factor Family AT2G36890 75.194 2.01e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pste8g00634 Myb_DNA-binding 1.2e-08 CL0123