Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00632 ACCACATCTTTTTCCTTTCTTTTTCGGACAATGGTGAGCCTCATCAGTCTCCAATAATATACACCTTGTCCCTGCCACGTGTTATCACCACAATCAACTCTCAGATAGCATCCACCGTGTGCATGGAGAATTGGATTTCCTTGTCTCCGTTTGCTATTCAACATCCAAAGCCTACATTGGAAGCAAAATCTTTGCAGACCCCGTTTTCAACTGGTCCCGTTTCATTCATTTCATGCCATGTTTTTCTCCCTCTTGACAAGCACAATATTAAGTAGCATTTTTTTCATGGCATTTTTCCTCCCTTCTCTCTTTGTACTTGAACCTGTCACTGTCCTTCTGCTTGTTAAAAACTGTGCTGCAACCTCTCTAAGCAAACTTCCCAACAAGAATCATATCTTCATAGAGAAAAGCTAGAATACAGGAGGGAGTTTCATCACTTTGTCTATCTCTAGCTTTTAATCAAACAAGTTACAGAAAACAGCTCTTTCCTTAACCAAAAGAAAAACTGTTTTTACTTTAACTCAGACAGCTGGTTTGGTGAACCATGAACAACAGTATTCCAGGTTGGGATTTTGAGAGTGATACGTGTCTCACCAATCAAAGAAAGGCCATAGGGCCGGACCAAGAACTTGTAGAGCTCCTTTGGCAAAATGGGCAAGTAGTTATGCACAGCCAAGCACACAAGAAACCAGTAGGGAATTCATCTAACTTGAGACAGCTTCAAAAAACTGATTGCTCAACATTAAGGACTAGTGGGCCATATGGGAACTCAAGCAACTTTGATCAAGAAGACACAGCCCCATGGCTCCAATACCCACTTGAGGACCCATTGGAACAAGATTTTTGCTCAAACCTTTTATCAGAACTACCACCACCTTGTGAAGTTGATTCTTTCAAGCCAATCAGGCAATTGGAAGAGGAAAAGTTTGCGAAATCTTTTGCCTCTGGTGCCCCCCATCGTCCTACTTCCAGTTCACAACCACTACCACCTAACATGAAACCCTCCTGTTTTCAGGGAATCCAAGGAAATCCCATGCCTGCTCCAAGATTTCATGTTCCCGATTCATCTCAGAAAATCAATGACTTTGGTGTATCAAGAAAGGTCCTAAATTTTCCTCACTTTTCAACACCCCGTAATGTTTCTTCAGCACCTCAAAAAACTATTCCTAATCTGCCCCAAAGTGAGGCTAGAGAGTACTCAGTGATCACAATTGGTTCTAGTCATTGCGGAAGCAATCACATCCCACAAGACCAAGATATGAGCAGGGTATCAAGCAGTGGTGTTTGGGCCACTACTAATAATACAACTTTATCTGCTCAGCCTGAAGCTGTCGGAGATTCTGTCCAGAGACCAATTTGTCCTAGGAGTGACAAAGGAAAATCAGAGATGGTTGAACCAACGGTGACTTCATCATCTGATGGCTCTGGCAGTACCGGTATTGGAAGAACTAATTGTTCCCTATCAACAAGAGATCATGGCCAAAAGAGAAAAGGAATAGAAGAACAAGCATCGGAGGAACAAAGTGAGGCTACAGAACTTAAATCAGCAAATGAAAACAAGTTATCTCAGCGGACTGGTTCAAGAAGGAACCGTGCAGCTGAAGTGCATAATCAATCAGAAAGGAGAAGAAGAGATAGGATCAACGAGAAGATGAGGACATTGCAGCAACTGATACCTAACAGTAACAAGACAGACAAAGCATCAATGTTAGAAGAGGCAATTGAATACTTGAAATCACTTCAGTTTCAGCTTCAGGTAATGTGGATGGGGGCTGGGATGACACCAGTTATGTTGCCAGGAATTCAACACTATATGGCACAAATGGGAATGGGTGCACCTTCTTTGCCAATGCAATCATCACACGATCAAGCTGCCATGTCTGTGCCTCAGATGCCAAACCAGAATCTAATGTGCCAAAATCCAGTCTTAGGTGCCTTTAATTACCAAAACCCATGCCTTTCAGAACAATATGCACGTTACATGGGTTACCACCATCTTATGCAAAATGCCTCTCAACCAATGAATGCATTGAGATATGGTTCCCAAGCAGTGCAACATAGTCAAACAATGATTGCACCAGGCAATAATAGCAGCGGACCCATCAGCGCAACAGCTAACATTGATGATGCTGTTAGTAGCAAAATGGGTTTTTCCACCTTTAACTGAATAGTGAATAGCAATACCTGAAAATTACTCAATTGGCTAATGGAGTACAAACACCAAGATGTGCTTTTTATCTATTTTGGAGTTCAAGCAATTTATTATATCCAATTTCAAGTTAATTATGTTGTTTAAAATTCTTCGCCAAATATATCAGTGCAGTTCCTATAGGACCATACCCATCAGGTTCAGCCATATATTTAATTTTCATTGTTTGTAGATCTGGAAAAGTAAATTAAACTAGATAAGTTAACGTGCTAATTTGTACTTCTATGAATACCATAACAATTATTATTTTACAATCATGCTATAGTACTATAGACTAGGAATGAAAAGCTAGATATTCTTGCTTTCGTTGTCTCTTAAATCTTATCTTTGCTTGTCCATATCCATACTAATTAAATTCGAC 2570 0.4043 MNNSIPGWDFESDTCLTNQRKAIGPDQELVELLWQNGQVVMHSQAHKKPVGNSSNLRQLQKTDCSTLRTSGPYGNSSNFDQEDTAPWLQYPLEDPLEQDFCSNLLSELPPPCEVDSFKPIRQLEEEKFAKSFASGAPHRPTSSSQPLPPNMKPSCFQGIQGNPMPAPRFHVPDSSQKINDFGVSRKVLNFPHFSTPRNVSSAPQKTIPNLPQSEAREYSVITIGSSHCGSNHIPQDQDMSRVSSSGVWATTNNTTLSAQPEAVGDSVQRPICPRSDKGKSEMVEPTVTSSSDGSGSTGIGRTNCSLSTRDHGQKRKGIEEQASEEQSEATELKSANENKLSQRTGSRRNRAAEVHNQSERRRRDRINEKMRTLQQLIPNSNKTDKASMLEEAIEYLKSLQFQLQVMWMGAGMTPVMLPGIQHYMAQMGMGAPSLPMQSSHDQAAMSVPQMPNQNLMCQNPVLGAFNYQNPCLSEQYARYMGYHHLMQNASQPMNALRYGSQAVQHSQTMIAPGNNSSGPISATANIDDAVSSKMGFSTFN 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00632 540 Gene3D - 345 406 IPR036638 GO:0046983
Pste8g00632 540 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 350 399 IPR011598 GO:0046983
Pste8g00632 540 MobiDBLite consensus disorder prediction 308 332 - -
Pste8g00632 540 Coils Coil 315 335 - -
Pste8g00632 540 MobiDBLite consensus disorder prediction 254 367 - -
Pste8g00632 540 FunFam Basic helix-loop-helix transcription factor 345 408 - -
Pste8g00632 540 CDD bHLH_AtPIF_like 350 413 IPR047265 -
Pste8g00632 540 PANTHER TRANSCRIPTION FACTOR PIF3 17 516 IPR044273 GO:0003700|GO:0006355
Pste8g00632 540 MobiDBLite consensus disorder prediction 282 307 - -
Pste8g00632 540 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 347 413 IPR036638 GO:0046983
Pste8g00632 540 Pfam Helix-loop-helix DNA-binding domain 354 400 IPR011598 GO:0046983
Pste8g00632 540 SMART finulus 356 405 IPR011598 GO:0046983
Pste8g00632 540 Coils Coil 356 376 - -
Pste8g00632 540 MobiDBLite consensus disorder prediction 343 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00632 Pste-Chr8 3262908 3267836 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00632 7 507 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 35.783 7.14e-55 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pste8g00632 HLH 5.7e-15 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste7g01069 7 9810228 9814730 Pste8g00632 8 3262908 3267836 PCT
Pste7g01014 7 9304884 9310611 Pste8g00632 8 3262908 3267836 PCT