Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00620 CCTCATTCTTCTTCCTTAAAAACACACATATATAAACACCGTACTCTGTTCCTTGATTCGCATTTTCAATTTCAAGAGAAATAAAAAAACAGAGCAACGTCCTCAATTTCTTCGAACCATGCCAGGATTAACGTGCAACGCTTGCAACACCGAATTCAAAGACGACACAGAGCAAAAGCTCCATTACAAGTCCGAATGGCATCGCTATAACCTCAAGCGCAAGGTGGCTGGGGTTCATGGGGATTATAAAAGTTCTAAGGCTCATGCTGAGCACCTTAAATCTCGTGGTCATATGATGCGGGCTTCTGAAGGAACCAGTAATGCAGATGAGAAGGCAATTATTAAGCCACTTCCACAACGTGTTATGAATAGGCCTCCTCCTCCTAGAAGAGAGGTAGAAAAGTCTGAAAATGAAGGAAGTGAAGATGAATGGGAGGAGGTTGATTCTGAAGATGATTTGGTTGATGGTGCTGCAAAGTCCATGACTGATTTGAATGTGAATGAGCATGGTGAAAATGATGCCATGGATGAAGATGATGATGATGATTTTGAGGAGATAGATCCCTCATGTTGCTTTATAGCACAAAACAATAGAAGATTGCATGGTTCACATGCACAAGCATCATGGATTTTCATTCCAGATGTTGAGTATTTGAAGGATCCAAAAGGCCTCCTCACATATCTTGGCCTTAAGGTCAAAAGGGACTACATGTGTCTGTACTGCAACGAACGATGTTATCCTTTCAGCAGCTTGGAAGCAGTCAGGAAACATATGGAAGCAAAAAGTCACTGTAAAGTGCATTATGGTGATGGTGATGATGAGGAGGAAGCAGAGTTAGAAGAGTTCTATGATTACAGCAGCAGTTACGTGGATGAACAAGGGAAGCAGCTTGTTGTATCCGGTGATACGGAAAACAATGTAGAACTTGTTGGTGGGTCTGAGCTCATAATCACTAGGAAATCTGGTGATAGAATGTCAACCAAAACACTTGGTTCCCGTGAATTTTTGCGCTATTATCGTCAGAAACCTCGGCCCTCGCCAGCAAATTTGGCTATCACTGCTGCGTTGGCTTCAAGGTACAGGAGCATGGGTTTGACCACTGTCCAATCAAGGGAGCAAATTGTGAGAATGAAAGTGCTGAAGGAAATGAATAGGTCAGGAGTGGAGAATATGCGTACCAAGATAGCAATGAAGAGTAATGTGATCCGGAACCTGCCAAAGAATGTCCCATATTAGTCCTCACTACTAGTAATAGTTTACTGAAGTGGTGCTGTGTAGTGGTGGTTTTTTCTGTAAGTTTTCCTTCTGAATTAGCTTCAAATTTTCTTCATTTCATGAAATCATACACAAGGCATTCAAAGGTAAAATAGAGTGACATCATATTTTCAAATGAAGTAGTATTGGACACTCTTCTTATTTCTTTATCGTTTGTGGTATCATCAACTTGTGGATGATAAGGACACTTTTGGTTGGTGCTTTTTCAGAGGGTTATAAATAGTTGAAATTTTGATTTCAAACTAAGGAGGAATTACAATTTTGCTGGTCC 1547 0.4079 MPGLTCNACNTEFKDDTEQKLHYKSEWHRYNLKRKVAGVHGDYKSSKAHAEHLKSRGHMMRASEGTSNADEKAIIKPLPQRVMNRPPPPRREVEKSENEGSEDEWEEVDSEDDLVDGAAKSMTDLNVNEHGENDAMDEDDDDDFEEIDPSCCFIAQNNRRLHGSHAQASWIFIPDVEYLKDPKGLLTYLGLKVKRDYMCLYCNERCYPFSSLEAVRKHMEAKSHCKVHYGDGDDEEEAELEEFYDYSSSYVDEQGKQLVVSGDTENNVELVGGSELIITRKSGDRMSTKTLGSREFLRYYRQKPRPSPANLAITAALASRYRSMGLTTVQSREQIVRMKVLKEMNRSGVENMRTKIAMKSNVIRNLPKNVPY 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00620 372 PANTHER ZINC FINGER PROTEIN 622 2 40 IPR040025 -
Pste8g00620 372 MobiDBLite consensus disorder prediction 43 112 - -
Pste8g00620 372 MobiDBLite consensus disorder prediction 43 59 - -
Pste8g00620 372 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Pste8g00620 372 MobiDBLite consensus disorder prediction 123 142 - -
Pste8g00620 372 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Pste8g00620 372 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Pste8g00620 372 Pfam C2H2 type zinc-finger (2 copies) 165 249 IPR041661 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00620 1 372 C2H2 Transcription Factor Family AT4G31420 58.473 8.49e-148 422
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste8g00620 zf-C2H2_2 8.5e-18 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g00620 8 3210546 3213700 Pste8g00620 8 3210546 3213700 ECH