Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00617 ATGAAAACTTCTGAGAGAACATGTGTAAGGCAGTATGGCAAATCTGAACTTCCACGCCTTCGTTGGACTCCTCAACTTCATCAACACTTTGTTCAAGCTATTCAATCTCTTGGTGGAAAACACAAGGCAACTCCAAAGCGAATTTTGCAGCAGATGCGTGTGAAAGGACTGAGGATCACTCACATCAAAAGCCCTCTTCAGGAACCACAGTCAAGTGCACACTTGATTAGTGATGATGTGTCAAATGAAGAAGAAAATTTTGCTGATCTATTATTCTCCTTTCCTCTAATTTCCATGATGCTAAGTGAGAAAAGCAGAGATAATGCGTTTTTCTTCATCAACTGCAGCTGTTAA 354 0.404 MKTSERTCVRQYGKSELPRLRWTPQLHQHFVQAIQSLGGKHKATPKRILQQMRVKGLRITHIKSPLQEPQSSAHLISDDVSNEEENFADLLFSFPLISMMLSEKSRDNAFFFINCSC 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00617 117 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 7 74 IPR046955 GO:0003700
Pste8g00617 117 NCBIfam myb-like DNA-binding domain, SHAQKYF class 18 67 IPR006447 GO:0003677
Pste8g00617 117 Gene3D - 17 72 - -
Pste8g00617 117 SUPERFAMILY Homeodomain-like 18 68 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00617 Pste-Chr8 3194392 3197042 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00617 9 67 G2-like Transcription Factor Family AT2G42660 61.017 2.77e-20 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pste8g00617 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste7g01035 7 9489540 9494502 Pste8g00617 8 3194392 3197042 PCT