Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00611 ATGAACGTGCAGCTCTCGTTTGCTTTCCCTTTCAACGAACACAGGGAGTCTCGGTTACCGAGCATCATCTCTCTCTGTGTTTTTCCTGTATCCTCTCTTTCCACTTGTTGCGTTTTGAAGCCTCTTACAAGAATTTCTCTCTCAAGATTTGTCTCTGCTTCATTCTCTCAAGCTTTTGTTCAGTTCAATCTTCTCTCTTTACTCAAAGTTAAGTCAAACAGTCCGTTGACTCAATTGGGACCTGGCGTATTTGGGGTCATGGATAACTCAAATGATTCATCTTCATCCTTGAGTTTTGTATCATCTCACCTGTCACATGGTTCTAGTAATCACAACGTGTCTTCCTCCACCGGCAATGGGCATGGGGCTAATATTGAAATTTTGAGTCTGAGTAAGCTCAGTGGAAGCCTTGAGAAGCTATTGATTGATGCTGAATATGATTATTGTGACGCTGAGATTCTTGTTGAAGACATCACTGTGGGCATTCATCGCTGTGTATTGGCATCGCGTAGTCCCTTTTTTCACGAGCTGTTTAAGAAAGGAACTGATGGATCAGGGAAGGAAGGAAAGCCAAGGTATCTCATGTCAGATTTGGTGCCTTATGGAACAGTTGGCTATGAAGCTTTCCAAGTTTTCTTGTATTATTTGTATACTGGAAGGCTGAAGGCTTCACCAACAGAAGTCACAACATGTGTTGACGAGACATGTAGCCATGATGCATGCCGCCCAGCTATCAATTATGCCTTGGAACTCATGTATGCTTCTGCCACTTTTCAGATGAAAGAGCTGGTTTTACTTTTTCAGCGCCATCTCCTAAATTTTGTTGAGAAGGCTCTTGTGGAAGATGTCATTCCCATTCTTATGGCTGCTTTCAACTGTCAACTTGATCAGCTTCTCTCTCGGTGCATTCAGAGAGTAGCAAGGTGTGACTTTGACGACATATCTTTGGAAAAGGAGCTCCCTCACGAAGCCGTGACTGAAATCAAATCACTCCGGTTCCCATCTCAGCCAGAATCCACACCTAATGCAATGGAAGTGGAGCCTTTGAATATGAAGAGTATCAGGAAAATCCATAAGTCGTTGGATTCTGATGATGTTGAGCTACTGAAGCTTCTTCTGAATGAGTCTAGTGTCACTCTAGATGATGCATATGCCCTGCACTATGCTTGTGCCTATAGTGACTCTAAGGTTATTCAAGAAGTTCTTAGTCTAGGCTTGGCTGATATCCTCCTTAGAAATTCCCGAGGATATACAGTTCTTCATGTGGCTGCAAGGCGAAAGGATCCATCGATTTTGGTAGCACTATTGAACAAAGGGGCACGTGCATCAGATACCACTCCAGATGGACAAACTGCTCTTGCAATTTGTCAGAGGTTGACAAGACGCAAGGATTATCATGAGAAAACAATGCAAGGTAAGGAGTCTAACAAAGACAGGCTTTGTGTTGATGTCCTGGAGAGGGAGCTGAGAAGAAATTCTATGACTGTCAATATCTCTGCTTCATCACAGTTAACAGCTGATGATTTGCACGTGAGACTAGATTACTTTGAAAATAGAGTTGCATTTGCTAAGATGTTGTTTCCCGCTGAGGCTAGGGTAGCCATTGAGAATGCTGAGGCAGATTCATCATCGTTGTATGCAAGCACATCAGCTTTGAAAAGCGCAAATGGCAATCTAAAAGAAGTAGATTTAAATGAATCTCCCTCTGCCCAAACCAGAAAACTTCAGTTAAGATTGCAAGCCCTTATGAAAACAGTGGAGAATGGTAGGCGCTTCTTTCCCCATTGCTCTGAAGTGCTTGATAAGTTTCTGGACGATGATATGCCAGATGTTTTCTTCCTAGAGAAGGGTAGTGAAGAAGAGCAGAAAATAAAGAAAGCACGATTCATGGAACTTAAAGATGATGTGCAAAAAGCATTTCACAAGGATATGGCTGAAAATAACCATTCGGGTTTTTCATCTTCAGTGTCTTCCTCTTCATCCTCCACTCGCAGGGAAGGTCTTAACCATAGAATGAAGAGAAAATGAATATGTTCTTGTGGAGTAGAGTGTTGCGACTTGCCAGTAGAACCTGTGGCATACTCTGCAAATAAGATGTTATGTTGAATACGTAAATTAGGGGGTTTTGCTAATGAACATGGAAGAATTTTGCTAGCTTGATTTAATTGGTCTTAGTTTTTGAACCAAAACAAAGAAAGATAAAAGAAGAAAAATGTATTGGCTTAAATTAAAATATATTTGGCCCTTCTCTGAGATGCAAAGTTTGTATAAAGATTTTTAAGACATTCATTTTAAAGGTTAACAATCTACAATAAATAGTCAGGTCAGGTGTGGTTGAATGTAAGCA 2347 0.4112 MNVQLSFAFPFNEHRESRLPSIISLCVFPVSSLSTCCVLKPLTRISLSRFVSASFSQAFVQFNLLSLLKVKSNSPLTQLGPGVFGVMDNSNDSSSSLSFVSSHLSHGSSNHNVSSSTGNGHGANIEILSLSKLSGSLEKLLIDAEYDYCDAEILVEDITVGIHRCVLASRSPFFHELFKKGTDGSGKEGKPRYLMSDLVPYGTVGYEAFQVFLYYLYTGRLKASPTEVTTCVDETCSHDACRPAINYALELMYASATFQMKELVLLFQRHLLNFVEKALVEDVIPILMAAFNCQLDQLLSRCIQRVARCDFDDISLEKELPHEAVTEIKSLRFPSQPESTPNAMEVEPLNMKSIRKIHKSLDSDDVELLKLLLNESSVTLDDAYALHYACAYSDSKVIQEVLSLGLADILLRNSRGYTVLHVAARRKDPSILVALLNKGARASDTTPDGQTALAICQRLTRRKDYHEKTMQGKESNKDRLCVDVLERELRRNSMTVNISASSQLTADDLHVRLDYFENRVAFAKMLFPAEARVAIENAEADSSSLYASTSALKSANGNLKEVDLNESPSAQTRKLQLRLQALMKTVENGRRFFPHCSEVLDKFLDDDMPDVFFLEKGSEEEQKIKKARFMELKDDVQKAFHKDMAENNHSGFSSSVSSSSSSTRREGLNHRMKRK 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00611 675 SMART BTB_4 149 275 IPR000210 GO:0005515
Pste8g00611 675 Gene3D Potassium Channel Kv1.1; Chain A 124 307 IPR011333 -
Pste8g00611 675 MobiDBLite consensus disorder prediction 647 665 - -
Pste8g00611 675 ProSiteProfiles Ankyrin repeat region circular profile. 415 440 - -
Pste8g00611 675 SUPERFAMILY Ankyrin repeat 350 458 IPR036770 -
Pste8g00611 675 SUPERFAMILY POZ domain 146 273 IPR011333 -
Pste8g00611 675 SMART ANK_2a 415 444 IPR002110 GO:0005515
Pste8g00611 675 SMART ANK_2a 381 411 IPR002110 GO:0005515
Pste8g00611 675 Pfam NPR1/NIM1 like defence protein C terminal 457 659 IPR021094 -
Pste8g00611 675 ProSiteProfiles Ankyrin repeat profile. 415 447 IPR002110 GO:0005515
Pste8g00611 675 Gene3D - 350 490 IPR036770 -
Pste8g00611 675 CDD BTB_POZ_NPR_plant 138 275 - -
Pste8g00611 675 MobiDBLite consensus disorder prediction 640 675 - -
Pste8g00611 675 ProSiteProfiles BTB domain profile. 149 225 IPR000210 GO:0005515
Pste8g00611 675 Pfam BTB/POZ domain 146 231 IPR000210 GO:0005515
Pste8g00611 675 Pfam Domain of unknown function (DUF3420) 310 358 IPR024228 -
Pste8g00611 675 FunFam BTB/POZ domain and ankyrin repeat-containing protein NPR1 337 479 - -
Pste8g00611 675 PANTHER REGULATORY PROTEIN NPR3 108 667 IPR044292 GO:0009862|GO:2000022|GO:2000031
Pste8g00611 675 Pfam Ankyrin repeats (3 copies) 364 442 IPR002110 GO:0005515
Pste8g00611 675 FunFam Regulatory protein NPR3 123 307 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00611 Pste-Chr8 3160297 3164561 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Pste8g00611 NPR1_like_C 1.3e-84 No_clan