Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00602 GTTCCCATGTTTCAAGTGATGCACAGACTAATAATGGATGTGGCCAAGTTACATGACTCTGAAGACAATGACAAGGACAAGAAAGAAGCTGAAGTTGTGCTTCCTGGGTTTAGATTCCATCCAACAGATGAAGAACTTGTGGGGTTTTATCTGAGACGAAAGGTGGAGAAGAAGCCTCTAAGAATTGAACTCATCAAACAGATTGACATCTACAAATACGATCCATGGGATCTTCCAAAAGCAAGTTGTGTTTGTGTGGGAGAGAAGGAATGGTACTTTTTCTGCAAAAGAGGGAGAAAATACAGGAACAGCATAAGGCCTAACAGGGTGACAGGGTCTGGATTTTGGAAAGCCACAGGGATTGATAAACCTATATACTGTGTTAAAGAACCCCATGAATGCATTGGTCTAAAGAAATCGCTGGTGTACTATTGTGGAAGTGCTGGTAAAGGCACCAAAACTGATTGGATGATGCACGAGTTTCGCCTTCCACCCAATGGAAAAACTAGCAATAATCCACAAGCTAATGATGTAAATGTTCAAGAAGCTGAAGTATGGACGCTATGTCGAATATTCAAAAGGGTCCCATCTTACAAGAGGTACACACCAAATTTGAAAGACTCAGCAGCAATCACGAAGCCAATTAACTCTTCAAGTTCCAAAACATGCAGCCAAGAATCTGACAAGGCCAAAACTTTCACAAACATTCAACAAAATGAAACGAAGCCACATGTTGACCAGTTGGTCCATGCTCAGCAGACTCCCACAAGTTTTTGGAATCATCACAATAATGACAATTGGGATGATCTTACATCTGTGGTTCACTTCGCTATTCATCCATCCACCCTTTCTCATCATTCATCATTCTCAACATCTTAATCTTAATACCTACATTTTTAGACTGTTTTCATGCTTAAACAACTACTAATAACAGTAACAAACACCCTACAAAGTTTGACCAGATATATTCTTTTTTGTCTTTCCTCATAGTATATTATCATTATTATTGTATGAACCGGTTATAGTTCCGAGATTATTCGTCGTCTAACACATCGTGTC 1059 0.3938 VPMFQVMHRLIMDVAKLHDSEDNDKDKKEAEVVLPGFRFHPTDEELVGFYLRRKVEKKPLRIELIKQIDIYKYDPWDLPKASCVCVGEKEWYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPIYCVKEPHECIGLKKSLVYYCGSAGKGTKTDWMMHEFRLPPNGKTSNNPQANDVNVQEAEVWTLCRIFKRVPSYKRYTPNLKDSAAITKPINSSSSKTCSQESDKAKTFTNIQQNETKPHVDQLVHAQQTPTSFWNHHNNDNWDDLTSVVHFAIHPSTLSHHSSFSTS 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00602 292 FunFam NAC domain-containing protein 35 42 197 - -
Pste8g00602 292 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 32 253 - -
Pste8g00602 292 Gene3D NAC domain 42 197 IPR036093 GO:0003677|GO:0006355
Pste8g00602 292 ProSiteProfiles NAC domain profile. 33 194 IPR003441 GO:0003677|GO:0006355
Pste8g00602 292 SUPERFAMILY NAC domain 31 193 IPR036093 GO:0003677|GO:0006355
Pste8g00602 292 Pfam No apical meristem (NAM) protein 35 163 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00602 Pste-Chr8 3116148 3118624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00602 10 195 NAC Transcription Factor Family AT5G39820 57.789 2.80e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pste8g00602 NAM 2.4e-35 No_clan