Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00593 AACACAGCAACAGCAAGCAGAGCAGTGGTGGGAAACAAGTGAAAGGAGAGAAGATGATGTGTCCCACAGTCTCTTACAATTCGAAACCGCGAAATTGGTTTTCGCCTTTGCCTTTCCATTTTTCTGTAGCCACTTTCAGGCCTTCACCCACGCTTCCGCTTCATTGCTCTCAGGAAAGAAGCCGTGCAACTCCAGCAGTTGAGCCTGATGAACACATTGGGAGAGTATCAATCACAAATGACCACATTTTGAGCGAAAACACTCCAGTGCTTCCGCAAAATGACCTACCTCCTCTAGTCAGTGCATTGAAGGCTTCTGCTGAGCAAAATGTTGCCTCTTTTCACTTTCCTGGACATAACAGAGGGCTTGCTGCACCCCCTTCATTGACTCGGCTCCTTGGAACAAGACCATTTGTTCATGACTTACCTGAGCTTCCAGAGCTAGGCAATCTCTTTTGTCCCCATGGTCCTGTATTTGAAGCGCAAACTGAAGCAGCCAAACTGTTTCAATCGTCACAGACATGGTTTCTTGTTGGAGGTACTACTTGTGGGATACAGGCAGCAATAATGGCCACCTGTTTTCCTGGGGACTATCTTATTCTTCCAAGGAATTCTCATATATCAGCTATATCTGCTATGGTATTATCTGGTGCTGTGCCTAAGTACATCGTTCCTAACTATGAGAACGATTGGGACATTGCTGCCGGTGTCACTCCATTACAGGTTTTGAAAGCCATCCAAGAACTAGAAATGAAAGGGAAAAAGGCAGCAGCAGTCTTCATCACTTCACCTACTTATCATGGTATTTGCAGTAATTTGAGCGAGATTTCTGAGCTGTGTCATTCCCATAAAATTCCTTTGATTGTGGATGAAGCTCACGGTGCACATTTTGGATTTCATTCTGAACTTCCCAACTCAGCCCTCCAGCAAGGAGCTGATCTGACTGTACAGTCCACCCACAAAGTTCTATGCTCTCTCACTCAATCATCTATGCTGCACATGTCAGGAAATATTGTAGATAAGGAAAAAATTTCTAGATGTCTCCAAACTATTCAATCCACAAGCCCTAGTTATCTGCTTTTGGCATCTCTAGATGCTGCAAGAGCTCTACTTAGTGAAAGACCTGATGTTGTATTCAACCAAGCAATGGAATTAGCTTATGAAGCTAAGTGCACACTAAAAATAATCCCTGGTATATCGCTTTCCAACTTTCCTGCTATTGATCCATTGCGTCTCACTGTAGGTTTTTGGAAGCTTGGTTTATCAGGTTACGAAGCAGATGAAATCTTGTACAGAGATTATGGAGTTGTCTGTGAACTCGTTGGGAATAAATCTATTACTTATGCATTTAATCTTGGAACTTGTAGGGTCCACGTCCAAAGACTTTTATTGGGAATAAAGCATTTGGCTGCAACATATGCTTCCATTCAGCAACCAGAAGAGAGAATGCTTACTGTTCATGCACCCTTTAATGATACGACCATGACTTTGATCCCTAGAGATGCCTTTTTTGCAAGTAAAAGAAAAGTAACAATAATGGAGAGTATTGGTAAGGTTTCAGGGGAGCTAATATGTCCTTACCCCCCAGGCATACCAGTATTAATCCCTGGTGAGGTTATTACTAAAAAAGCTGTTGATTATCTTCTTTATGTTAGGAGTAAAGGTGCTGATATTAGTGGAGCATCAGATCCCTTACTTTCTTCAATATTTGCAATGTATAGGAAATCGGCTTGGGCGAAGCACCTTGAAGTTAAAACTTTCCAAATTCTGAGGAGTTATACAGCTCCAGCATTGCAGAATCTGTTCAATGGGGCTAAACTTCATAGCATAAACTGGGGAGAGGGTAGCAATGCCCATTCCATGAGAAATGGCAATTCACTAGATAAGCGTACAGATGGCCAGGAACCCTATTCTAAACATGGAGAGGAGGAAAGAGATAGGGCAATCAATGCAGCAAAAGCATTTGAACCACCTAACTCTTTCTGTCGGTATTTGCCATCCTTCTTTGCAGAAAAGCATTTGAATGGAGTTTCAGGGTTTGTTAAACTTCGGATCTCTAATGTGAGACTGTTGCTGGTTTGGTGCCTTTATAGAGGAGGTAGAGCCAAGTTAAGCCAGGGGTGGTTTGAATTTTCATTAGAGAATAATTTTGGGGAAGGTGATGTCTGTGTGTTTGAGGTGCTTAGAATGAAAGTAGTGCTGCAAGTTCCTGTTTTTCGTGTTACTGAGGACGTGGGATTGTTGACCCTTCCTTTGCAGCAGAACCAAAACATGAGCTCAGCTAAACTGCTGAACACTCACTTGCAGCAACACCTCACTTCACCTAAACTGATAAATTATATTATAACTTCTGCAAGATGGCTGTCT 2366 0.4243 MMCPTVSYNSKPRNWFSPLPFHFSVATFRPSPTLPLHCSQERSRATPAVEPDEHIGRVSITNDHILSENTPVLPQNDLPPLVSALKASAEQNVASFHFPGHNRGLAAPPSLTRLLGTRPFVHDLPELPELGNLFCPHGPVFEAQTEAAKLFQSSQTWFLVGGTTCGIQAAIMATCFPGDYLILPRNSHISAISAMVLSGAVPKYIVPNYENDWDIAAGVTPLQVLKAIQELEMKGKKAAAVFITSPTYHGICSNLSEISELCHSHKIPLIVDEAHGAHFGFHSELPNSALQQGADLTVQSTHKVLCSLTQSSMLHMSGNIVDKEKISRCLQTIQSTSPSYLLLASLDAARALLSERPDVVFNQAMELAYEAKCTLKIIPGISLSNFPAIDPLRLTVGFWKLGLSGYEADEILYRDYGVVCELVGNKSITYAFNLGTCRVHVQRLLLGIKHLAATYASIQQPEERMLTVHAPFNDTTMTLIPRDAFFASKRKVTIMESIGKVSGELICPYPPGIPVLIPGEVITKKAVDYLLYVRSKGADISGASDPLLSSIFAMYRKSAWAKHLEVKTFQILRSYTAPALQNLFNGAKLHSINWGEGSNAHSMRNGNSLDKRTDGQEPYSKHGEEERDRAINAAKAFEPPNSFCRYLPSFFAEKHLNGVSGFVKLRISNVRLLLVWCLYRGGRAKLSQGWFEFSLENNFGEGDVCVFEVLRMKVVLQVPVFRVTEDVGLLTLPLQQNQNMSSAKLLNTHLQQHLTSPKLINYIITSARWLS 771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00593 771 Pfam Orn/Lys/Arg decarboxylase, major domain 79 377 IPR000310 GO:0003824
Pste8g00593 771 SUPERFAMILY Ornithine decarboxylase C-terminal domain 411 555 IPR036633 GO:0003824
Pste8g00593 771 Gene3D - 79 358 IPR015421 GO:0003824
Pste8g00593 771 MobiDBLite consensus disorder prediction 603 626 - -
Pste8g00593 771 SUPERFAMILY PLP-dependent transferases 79 450 IPR015424 -
Pste8g00593 771 ProSiteProfiles B3 DNA-binding domain profile. 676 724 IPR003340 GO:0003677
Pste8g00593 771 PANTHER ARGININE DECARBOXYLASE 71 553 - -
Pste8g00593 771 MobiDBLite consensus disorder prediction 607 626 - -
Pste8g00593 771 Gene3D - 623 727 IPR015300 -
Pste8g00593 771 SUPERFAMILY DNA-binding pseudobarrel domain 643 722 IPR015300 -
Pste8g00593 771 CDD B3_DNA 641 722 IPR003340 GO:0003677
Pste8g00593 771 CDD Orn_deC_like 80 372 IPR000310 GO:0003824
Pste8g00593 771 Pfam Orn/Lys/Arg decarboxylase, C-terminal domain 475 536 IPR008286 GO:0003824
Pste8g00593 771 Gene3D - 457 558 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00593 Pste-Chr8 3059466 3063490 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00593 625 727 REM Transcription Factor Family AT1G49480 55.932 3.32e-34 129