Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00586 CGATAATAGTAACAGTAATAGGTGTTGTTGAGGTGAGGAAGACAAAAGAGATCAGAGAGGGCCCGTTAAAGGCTGCAACACAAATGAGTGGCACTGCACCAAAGCCTACTACTACTCTCTATTATGTTCTCTCTCTTTCTCTTTTCTTGTTTTTACTCATTCGTGGCTCTTCTACCTCCATCTATCTCACACAACTTTTTCATTCCTCTCCAACACTAGCTCCTGCATATACCTCTTTTTCCCTCTTGTTTGTTATGCAATCTATCTTTTCCTCTTCAGCCTTTACACTCTCTTTCTTCCATGCTTTTCGTTTTCTAGAGGTTCTTAGAGGTTGACGGAGGGTAGCTACACATCCTTTCCTTTCATGTTTTCAAATGGTGGCTCCGCTTGTTTTGGTGGGACTTGAGAGATAACTGATAGCATGGACCTATTTTCCTCAAGAGAGTAAAGTAATTCTTCCTAGGAAAAGGATAACTACAATACTTCCAAGAAAGGGAATAAGGAGAGATTAATCCAGTTAACCATGAATTTGAACAGTGACCATTCCATTCTTCAAGTAATGCTGTTCTAAAACACCATTGAAGAAGTATCAAAAGCCTCTTACTGCATTTCCTAGATGGAGAACAATATGTACAGTGCTCCACTGAACATCACTGATCGAAATTCTACTATCATAGAAGAAATTTCGCAGCATTTAGCACCAAAGCCACTGATTCATTGCTATTCATTTGACCTCAATAACCAAAACCCCATTATAAATGGAATTCCTGTACTTGCTGGAGAGCAAGGTGAACCTACAACTGATGTCCATGTAGATGGTTGCTTCATGAACCCTGCTAGTATTGCCGATTCCAATTCATTTGTCACATCACAAGGAAAGACTATTGTAGGAGATGCCTCAAATCCCATTAACAACAATGACTATCAAGAGCATGTAGCTGGAGGAATGCCAATTGCTTCTGCTTCACTTGCTGCTAGAATAGGCCATCAAGAAACTCTAGAGAGTGCAGCAGCTATGCCTCTTTCAATCTATTCATTGGAGGCATTAGGACCATATATCTTCAATAATTGGCAGGACACATCAAATCCTTTGTCTGCAACTTTTGGTGATCATGCTAATGATGAATTACCTGGTATTGGTAAGTGGCATTTGAACAAGTTTCCGAAAGCTCCAGAAGCTGATGCGACTGAGATTCTGGCTTACTCATCCATAGGAAACCTGGTTCAAAATGGATGGACATCATCAAATGTAGCAAACTTGGCCAATTTTGCCTACAATTCCTCCAATTGTAGCAATGAGCTATCACTAAGTCTTGTGAGATCTCCAACTACTGGTCAGTGCTCAGAGATGAGCTGTTCTGAAGCATCGCATAACATGAATGGATCAAGTTCAGGCTTGGAGCAACCCTCCTGCAGCAGTAAGGATCTGTCAATGAGATTAGGTGCTAACAAAGATGTTCAATTTTCACCAGCAATTTTAGGGTCCAGATATCTGGCTGGAATTCAAGATATACTTGCTCAAGTTGCAGCATATTCATTTGAAAATATAGAGCAGATAAATCACTCAGCTGCTGGTGTTAGAACAGGAGGAAATACTTCAGTTTCAGATTTCACACTAAAGAGAAGGGTAGAGATTAATCAAAATGCAAATTCCATGTTTGAAGCACATGTAGAATCTCCATTGCAAAGACAGGCTACTGAATCAAACAAATCCCAACTTCTCATGCTTCTACAGCTGGTGGACAACGGATATAGTCAGTGTTTGGATGAGATTCATACTGTGATATCTGCATTCCATGCTGCTACTGAGCTGGATCCACACATGCATGCACATTTTGCGCTTCAAACGATCTCTTTCTTATACAAGGACTTGCGAGAGAGGATTAGCAATTGCATTCTTGCAATGGGACCAGATTTTAACAGCTTGTGTTCAGAAGAAGAGAAGGAATGGTCTATTGAAACTTCATTCATTCAAAAGCAATGGGCTCTCCAACAATTGAAAAGAAAAGATCAGTTATGGAGGCCCCAAAGGGGCTTGCCGGAAAGATCTGTCTCAGTTCTACATGTGATGGATTTCAGGTATCCTAAGGATGCAGAGAAGCATTTACTTGCAGTAAAAAGTGGATTGACAAGAAGCCAGGTATCCAATTGGTTTATCAATGCTCGTGTTCGGCTATGGAAGCCTATGATTGAAGAAATGTATGCTGAAATGAGTAGAAGAAAAGCTTGTAGAAATGAAGGAGGAATGGAGATCACTCAGAGAAGCAGGATAAGCATGAACAATCCAATGCTGAATATCAATTGAAACTGAGGAAAGTCACCAATAACATGATGGTGCATTACTATTATTATAATTATTATTTTTTGGATCAAGTAAGAAGATTGACACAACTGAAATCAGATTTCTGTATAATACTCTGCTTAGTTGTGTATTATATGAGCAATTACAGTTATCTTAAAAAAGATGACTTCATATAATGGATGTCTAAAGATCATTTCTCGCAGTTATAACATGACATATCAGTAAATAACACGGAAGTATTTTTACTG 2550 0.3925 MENNMYSAPLNITDRNSTIIEEISQHLAPKPLIHCYSFDLNNQNPIINGIPVLAGEQGEPTTDVHVDGCFMNPASIADSNSFVTSQGKTIVGDASNPINNNDYQEHVAGGMPIASASLAARIGHQETLESAAAMPLSIYSLEALGPYIFNNWQDTSNPLSATFGDHANDELPGIGKWHLNKFPKAPEADATEILAYSSIGNLVQNGWTSSNVANLANFAYNSSNCSNELSLSLVRSPTTGQCSEMSCSEASHNMNGSSSGLEQPSCSSKDLSMRLGANKDVQFSPAILGSRYLAGIQDILAQVAAYSFENIEQINHSAAGVRTGGNTSVSDFTLKRRVEINQNANSMFEAHVESPLQRQATESNKSQLLMLLQLVDNGYSQCLDEIHTVISAFHAATELDPHMHAHFALQTISFLYKDLRERISNCILAMGPDFNSLCSEEEKEWSIETSFIQKQWALQQLKRKDQLWRPQRGLPERSVSVLHVMDFRYPKDAEKHLLAVKSGLTRSQVSNWFINARVRLWKPMIEEMYAEMSRRKACRNEGGMEITQRSRISMNNPMLNIN 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00586 562 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 244 536 - -
Pste8g00586 562 CDD homeodomain 468 524 IPR001356 GO:0003677
Pste8g00586 562 Pfam Homeobox KN domain 489 519 IPR008422 GO:0003677|GO:0006355
Pste8g00586 562 SMART HOX_1 468 527 IPR001356 GO:0003677
Pste8g00586 562 ProSiteProfiles 'Homeobox' domain profile. 488 523 IPR001356 GO:0003677
Pste8g00586 562 SMART prehox3 281 425 IPR006563 -
Pste8g00586 562 Gene3D - 463 538 - -
Pste8g00586 562 Pfam Associated with HOX 287 424 IPR006563 -
Pste8g00586 562 SUPERFAMILY Homeodomain-like 488 532 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00586 Pste-Chr8 3023728 3027677 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00586 227 536 Homeobox Transcription Factor Family AT4G32980 52.848 1.42e-94 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pste8g00586 POX 7.1e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g00586 8 3023728 3027677 Pste8g00586 8 3023728 3027677 ECH
Pste8g00586 8 3023728 3027677 Pste2g01284 2 14163257 14165600 PCT