Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00557 AGATTTGAAGGTAATTAACAATTGATGGATGAGTATTCTGGTAAAAGAGGCATGGATGGGGTGGTAGGCTCTAGAAAGGGGATGAACAATGTATTTAGAGATACTGCTAATACTAGAGATCCTGATGAGAACGCAGCTAAAAACAAAGACAGCACGGTGCTTGAAGGACTTCGGGGACCGATGACAAGAGTTAGAGCTAGGAAAGCAAAAGAGGCTTTACAACAAGTGGTAACAACAAGTGGTAGCAACAATTCTGTAAATGGTCAAATTTGCAGCAAATTGGCTTGCAGTAGTAGAGCTAATCTTCCCAAAGTTTCTCAAGGCAGATCTGCTGAAAAATGTAAATCTTTTAGGTCTTCATTCCAGTCCTCTTCAAGTAGTAAGGAAGTGATTGGAAGTTCTTCTAGAATGATTAGTAACCCAGCAAAGCGACTTATAGAACCTCAGAAAACATTATCCTCTCAGTTTGAGACAGATTCATCTGAAACTAGTAGTGTATTGGATGAACCAGAAACTTCAGATCTCATCCCTCAACCAGATGAATGTCAAAGAAGGCCTCAAGCCGGAGCAAGTACAGAGTCTAGTAATGTGATACTGATGGAAGTAGGAAGCTCCAGTGCAGTGTCGACTAGATCTCAAAGGAATTTAAATCAAATACCTCGATTGTGTGGGCAAGAAATTAAAACCACTGGCACTGGCTCAGTGAGACCTGCTGTTTCCAGCAGGTATGGGTTGAGGAACCTCAGATGCAACTCTATATCTGACGTCGTCCCGGCTGGTTGTTCATCATCAGATTCTAGCCTTAATAGAAGGAGGGATACAATAAAAAGGGGAATTTATGAAAGGGGAAGCAGTTCTACTTTTAGAGAGAAAAATATCACTGGGCCTTCACTGGAAGGACGTAATTCTGCCTCCAGAAATGGGGCATCTATATCGGATTCAAGAAGATCTAGAAATATTCCTTCTAACCGCAACACCAGCATGGCATCAGTAAGAACTCAAAGACCTATTAGTGGTCATGCCAGAAGAGGGATTTCTCGCCTACGAAATGAAAACCCTGTGGTGGAAATCAGTGAGTCCCCAGTTATGGTAGCCCTTTCACCATACTCGGGTGATCTTAATGCTCCTAGCTTTTCATATCATACTTCTATGGAGACTCCTTTAAGTGGCTCAAGCTCTTATGGTAGACCAGGAAATAGAAATGAGCAGTTATGTGGTGTTATGCCTGTGTCTCTTGAAGAAGATGACATCACTCATTCTCTAACAAATCAGGAGAGAGTTCAACATTACAATATGGGTGTTATTGATGAGGTATTATTGGCACTTGAGAGAATAGAACAAGATTCTGAGCTAACTGACGAGCAAATTCTTTTTTTGGAGACCAACTTGTTCATGAATGGATTTAACTTTTATGATCACCATAGAGACATGCGGTTGGATATTGATAACATGTCCTATGAGGAACTTTTAGCTCTAGAAGAAAGGATGGGAACTGTGAGCACAGCTCTACCGGAGGAAGCACTTGCAGAATGCCTTAAAAGAAGTATATATCAGCCTGCATCTTCAGATGATGCAGATGAGAGTTGTAATGAGGACAAAGATGATATCAAATGCTGTATTTGTCAGGAAGAATATGTTGTTGGAGATGAAATTGGGAGTCTTCAATGTGAGCATAAATTTCATGTGGTTTGCATACAAGAGTGGCTGGGGGTGAAGAACTGGTGTCCTATTTGTAAAGTATCTGCTGCACAGTCTAATTCATCTTCACCTCATTGATTGCATTGTTCCTTTTACTTTTCAGTTTTCATTTTGTACAAAAACACAGACACAGATGTTCCTCACCTCTTCTTATTGATCATATATACATAGCCAATATCTTCATCTGGAAAGTAATAAGCTAAGGCACTGACTTAATGGA 1918 0.4046 MDEYSGKRGMDGVVGSRKGMNNVFRDTANTRDPDENAAKNKDSTVLEGLRGPMTRVRARKAKEALQQVVTTSGSNNSVNGQICSKLACSSRANLPKVSQGRSAEKCKSFRSSFQSSSSSKEVIGSSSRMISNPAKRLIEPQKTLSSQFETDSSETSSVLDEPETSDLIPQPDECQRRPQAGASTESSNVILMEVGSSSAVSTRSQRNLNQIPRLCGQEIKTTGTGSVRPAVSSRYGLRNLRCNSISDVVPAGCSSSDSSLNRRRDTIKRGIYERGSSSTFREKNITGPSLEGRNSASRNGASISDSRRSRNIPSNRNTSMASVRTQRPISGHARRGISRLRNENPVVEISESPVMVALSPYSGDLNAPSFSYHTSMETPLSGSSSYGRPGNRNEQLCGVMPVSLEEDDITHSLTNQERVQHYNMGVIDEVLLALERIEQDSELTDEQILFLETNLFMNGFNFYDHHRDMRLDIDNMSYEELLALEERMGTVSTALPEEALAECLKRSIYQPASSDDADESCNEDKDDIKCCICQEEYVVGDEIGSLQCEHKFHVVCIQEWLGVKNWCPICKVSAAQSNSSSPH 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00557 583 Pfam Ring finger domain 529 571 IPR001841 -
Pste8g00557 583 FunFam E3 ubiquitin-protein ligase arkadia 492 576 - -
Pste8g00557 583 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 227 575 IPR045191 GO:0061630
Pste8g00557 583 MobiDBLite consensus disorder prediction 117 188 - -
Pste8g00557 583 MobiDBLite consensus disorder prediction 277 326 - -
Pste8g00557 583 ProSiteProfiles Zinc finger RING-type profile. 530 571 IPR001841 -
Pste8g00557 583 MobiDBLite consensus disorder prediction 1 45 - -
Pste8g00557 583 SUPERFAMILY RING/U-box 524 574 - -
Pste8g00557 583 SMART ring_2 530 570 IPR001841 -
Pste8g00557 583 MobiDBLite consensus disorder prediction 117 163 - -
Pste8g00557 583 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 494 576 IPR013083 -
Pste8g00557 583 MobiDBLite consensus disorder prediction 250 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00557 Pste-Chr8 2886526 2890297 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00557 426 577 C3H Transcription Factor Family AT2G15530 41.447 1.14e-35 140
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g00557 8 2886526 2890297 Pste8g00557 8 2886526 2890297 ECH
Pste8g00557 8 2886526 2890297 Pste2g02008 2 20275911 20280519 PCT