Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00555 TCCAATCCTTCATTTTCCATTTTTGCAAATTCAATTCTCCTATTCAAGCAAATGATTCCAGAACATGAATCTGTTTTCAATTCCAATCATCTCAAGCTATATTACGGAAAGCTGTTTCCTTTCTCTGATTTAGTTAAATGGGTGTCCTATGGCAACGATGGGAAGCATCCTGGTTGTGATCAATCCTACATCGGGCGAAGAGAGTTTTCCTTCACTCTGGAGAATGATATATATCTGCGCTTCCAATCTTTTAACAATGCCCTTGAGCTCGAAAATTCCATCAAAGAAAGGTCCCCTGTTAAGATAGATATTGGACCTGTCTACACTGTTGATCCTTCAAAAAGGCATGCCTATGCACAGAGTGATGATAATGCCTTTGCCCCAGTTGAGAGGGAGTTGATTTTTGATATAGATATGACAGATTATGATGATGTTAGATACTGTTGTTCAGGTGCGGACGTTTGTTTGGTTTGCTGGCCATTGATGACTATAGCCATAAAAGTGATTGATACTTCCTTAAGAGATGACTTGGGTTTCAAACACATTCTCTGGGTATATAGTGGACGCAGAGGTGTTCATTGTTGGGTTTGTGATGGGAAGGCAAGGAGGTTGACTAATGAACAAAGAGGGGCTATTGCTGACTACTTTCGTGTCTACAAGGGCAATGAAAATAGTCACAAGAAGGTTTCTTTGACGGGTGCTGCTCTTCATCCTTTCTTGGCGACATCATACACTAATGTTCTCAAGAACTATTTTGAGAAAAATCTGCTTACAGGTCAAAATTTACTTGCTACCGAGGAGAGATATGAGAAGATCCTTGACATGATTCCAGATGAATCTATTGCTTCTGAACTTAGGGGAAGATGGCAAGATAGTAGGCGGTCTTCCAGTGCAAAAGAAGACATCAATGTTGTTCGATGGGAACAGTGCAAACAGGTGCTGCAATCTGGAAAACATAAGGCACAAGGGTTGCGTCGGTGCATTGAAGAGATTGTGTTCTCCTTTACCTACCCCAGGCTAGATATGGAGGTTTCTAAACATATGAATCATTTGCTTAAAGCACCATTCTGTGTTCATCCTAAGACAGGCCGTGTTTGTGTCCCTATTGATCCAAATCGGTGTGAGGAATTTGATCCTACTACAGTACCCACCCTTTCACAGCTGATAGAAGAGCTTAATAGTGAAGGCTCAAGAACTGATGATGATGGTGAATTGAATAGAACTTCTCTTGGAAATGCAATCACGCTCTTCAGATCGTCATTCTTACAGCCTTTACTAAAAGCCTGCAAGGAGGAGATAGAAAATTGCTATAACTTAAAATTGCAGCAGTCAAAGAATTCCCTTGGTTGGTAGTGGCACGTATTCTTGACTGGTTACGTAGAGCTATCGTGGGGTCATATTAGTTGACGCTATCAAATGATGAAATGTTCGAGGTACTGTTGAACTATAAAGAAGCCTTTTTAACTCCTTGTATTTTCTTACAACCACAGCCGTTATTTCTATTTCTGGTGAGACGAGGACACTTGATTTGAATGTTTCCATCCACTGTATAAATTTCGGATGACAGCTAGGTATTCCATGTCATCTTAAAATGTGTAGGAATAGTTGAAGATTAATTTGCGTTGAATTTAGCAGTGATTTGAAATGTTTCCATCCACTGTATAAATTTTGGATGACAGCTATTTTATTGTAAAGGACTACAAATTATTGAGTATAGTTATATTCCAGGTTTTTGACATTTTGATTATCAAAA 1753 0.393 SNPSFSIFANSILLFKQMIPEHESVFNSNHLKLYYGKLFPFSDLVKWVSYGNDGKHPGCDQSYIGRREFSFTLENDIYLRFQSFNNALELENSIKERSPVKIDIGPVYTVDPSKRHAYAQSDDNAFAPVERELIFDIDMTDYDDVRYCCSGADVCLVCWPLMTIAIKVIDTSLRDDLGFKHILWVYSGRRGVHCWVCDGKARRLTNEQRGAIADYFRVYKGNENSHKKVSLTGAALHPFLATSYTNVLKNYFEKNLLTGQNLLATEERYEKILDMIPDESIASELRGRWQDSRRSSSAKEDINVVRWEQCKQVLQSGKHKAQGLRRCIEEIVFSFTYPRLDMEVSKHMNHLLKAPFCVHPKTGRVCVPIDPNRCEEFDPTTVPTLSQLIEELNSEGSRTDDDGELNRTSLGNAITLFRSSFLQPLLKACKEEIENCYNLKLQQSKNSLGW 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00555 450 CDD AE_Prim_S 40 379 IPR014052 GO:0003896|GO:0006269
Pste8g00555 450 SUPERFAMILY Prim-pol domain 26 393 - -
Pste8g00555 450 NCBIfam eukaryotic-type DNA primase catalytic subunit PriS 32 391 IPR014052 GO:0003896|GO:0006269
Pste8g00555 450 FunFam DNA primase 18 431 - -
Pste8g00555 450 PANTHER DNA PRIMASE SMALL SUBUNIT 23 434 - -
Pste8g00555 450 Pfam DNA primase small subunit 135 370 IPR002755 GO:0003896|GO:0006269
Pste8g00555 450 Gene3D DNA primase, PRIM domain 17 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00555 Pste-Chr8 2878948 2884165 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00555 20 450 Core DNA Replication Machinery Family AT5G41880 67.361 0.0 630