Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00539 ATTGTTTCTTTTTCTTTCCTACTGAAATTTTCAAGAGACAAGCTTAACTCCTATTTTGAGTCCATAAATACCTGTCTCATATGCATACCATAGCCCATCCAGTTCCATATTTTGCAACCTTTTCTCCTCAGTTCTAGCATAACTCCAAACACTACAAATAGTTCTCATTGCACAGGAAGAGATGGAGTTTCCGAAGGAAGCAATATCAGAAGGGTGTTCTCAGAAGAAAAGTGGAAGAGGGAAAATAGAAATCAAACGGATCGAGAACACAACGAACAGGCAAGTTACCTTCTGCAAGCGTCGCAATGGGTTGCTCAAGAAGGCTTATGAATTGTCTGTTCTGTGTGACGCTGAGGTTGCTCTTGTTGTCTTCTCAAGCCGTGGACGCCTCTATGAGTATGCCAACAACAGTGTTAGAGGAACTATCGATAGGTACAAGAAAGCATGTGCTGCTTCCTCAAGTGCAGAATCCGTCTCTGAAGCTAATACACAGTTTTATCAACAGGAATCGTCCAAATTAAGAAGACAAATAAAAGACATTCAGAATCTAAACAGGCACATCCTTGGTGAAGCTCTTAGCTCTCTAAGTCTAAAGGAATTAAAGAACCTTGAAAGTAGATTGGAAAAAGGTTTAAGCAGAGTCAGATCCAGAAAGCATGAAACACTGTTTGCTGATATTGAGTTCATGCAAAAGCGGGAAATAGAGCTGCAAAACCATAATAATTTCCTGCGAGCTAAGATAGCTGAACAGGAGAGAGCACAAGTACGGCAACCAAATTTGATGGCGGGAACAGCGTGCGAGTCACAATCATATGACAGAAATTTCTTCCCTGTAAATCTCATTGATTCCAATAATCAGTATTCACGTCAAGACCAGACTGCTCTTCAACTTGTGTAAGCACATTCACAATTAGTTACAAGTTGCCAATGCGCATGCCACAACTTTCTATGGTTCGCTCAGCCTGAATAGCTAGTTAATTAATTAATTAATTTTGCAAGTGATGCATGCATCCCAAACTTCCATGAATGACTGACTGCCCTTAGAACTTCATCTGCTAAAATAGTTCTTCTTCAACAATCAACATTAACTGTACCAATTCATCTTATACTTTATGTATCTTTCAATATTTCTATTCAGTCTTGGTGCACTCTATTACTTTGTATGTTTTATGGATTGGGCCTATTATATATTATTAAATGCCTGTTTTAATCTGAACATTATTGTATCCAGG 1232 0.3872 MEFPKEAISEGCSQKKSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRGTIDRYKKACAASSSAESVSEANTQFYQQESSKLRRQIKDIQNLNRHILGEALSSLSLKELKNLESRLEKGLSRVRSRKHETLFADIEFMQKREIELQNHNNFLRAKIAEQERAQVRQPNLMAGTACESQSYDRNFFPVNLIDSNNQYSRQDQTALQLV 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00539 238 CDD MADS_MEF2_like 18 87 IPR033896 GO:0000977|GO:0045944
Pste8g00539 238 PANTHER SERUM RESPONSE FACTOR HOMOLOG 19 181 - -
Pste8g00539 238 FunFam agamous-like MADS-box protein AGL11 29 112 - -
Pste8g00539 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Pste8g00539 238 Coils Coil 137 157 - -
Pste8g00539 238 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Pste8g00539 238 ProSiteProfiles K-box domain profile. 103 193 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste8g00539 238 SUPERFAMILY SRF-like 18 92 IPR036879 GO:0003677|GO:0046983
Pste8g00539 238 Pfam K-box region 101 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pste8g00539 238 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Pste8g00539 238 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Pste8g00539 238 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Pste8g00539 238 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Pste8g00539 238 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Pste8g00539 238 Gene3D - 29 101 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00539 Pste-Chr8 2798806 2804714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00539 13 238 MADS-box Gene Family AT3G58780 69.620 1.03e-115 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pste8g00539 K-box 2.2e-25 No_clan