Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00538 ATGCAGGGTGATGTAGCAGCTAAACTAGATGAAGCAAATGAGAAGGATGATAAGATAGTAGTGCATGATGGATCATCGAGCAACTGCAATTCATCATTGGTTTCAGCTGATGAGGGTGTTAAGGAAGATCGAAGCTGCGCATGTGAAGAGAAAGAGGTCAAAAATGATCACGGGTCTGGGAAATGGATGTCTTCTAAGATGAGGTTAATGAAAAAAATGATGAGACGGAGTATGAGTCCAACCACTGACAAAGCAATCAATTCAAGCCCCAGATTCCAAAATCAAGGGCTCGAAAGCAGGTACAGACAAAGAAGCCCTCGTAACAACACCACTACCACCACTAGGGTTTGTTCTGATTGTAATACAAGCACTACCCCACTTTGGAGGAGTGGCCCTAAGGGTCCTAAGTCGCTTTGCAATGCATGTGGCATTAGGCAGAGGAAGGCAAGAAGAGCAATGGCGGAAGCTGCACATGGTTTGGTCAGTCCCATAAATAATGCAGCATGTGCAAAGACCAGAGTGCACAACAAGGAAAAGAAGTCTCGTGCAAACCATTTTGCACAGTTGAAGAACAAGTACAAGTCCACTACAACCTCCACTGCTGCCACTTCAGGTTCATCTGAGGGAGTGAGAAAGCTTGAATATTTCAAGGACTTTTCCATAAATTTGAGGACTAACTCTTCTTTTCAACAAGTGTTTCCACGGGATGAAGTAGCTGAGGCAGCATTGCTTCTCATGGACTTATCTTGTGGTTTTGTTCAATTATAA 768 0.4375 MQGDVAAKLDEANEKDDKIVVHDGSSSNCNSSLVSADEGVKEDRSCACEEKEVKNDHGSGKWMSSKMRLMKKMMRRSMSPTTDKAINSSPRFQNQGLESRYRQRSPRNNTTTTTRVCSDCNTSTTPLWRSGPKGPKSLCNACGIRQRKARRAMAEAAHGLVSPINNAACAKTRVHNKEKKSRANHFAQLKNKYKSTTTSTAATSGSSEGVRKLEYFKDFSINLRTNSSFQQVFPRDEVAEAALLLMDLSCGFVQL 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00538 255 MobiDBLite consensus disorder prediction 1 36 - -
Pste8g00538 255 Pfam GATA zinc finger 117 150 IPR000679 GO:0006355|GO:0043565
Pste8g00538 255 SMART GATA_3 111 162 IPR000679 GO:0006355|GO:0043565
Pste8g00538 255 ProSiteProfiles GATA-type zinc finger domain profile. 111 147 IPR000679 GO:0006355|GO:0043565
Pste8g00538 255 ProSitePatterns GATA-type zinc finger domain. 117 142 IPR000679 GO:0006355|GO:0043565
Pste8g00538 255 MobiDBLite consensus disorder prediction 8 22 - -
Pste8g00538 255 MobiDBLite consensus disorder prediction 77 116 - -
Pste8g00538 255 MobiDBLite consensus disorder prediction 80 116 - -
Pste8g00538 255 CDD ZnF_GATA 116 166 IPR000679 GO:0006355|GO:0043565
Pste8g00538 255 Gene3D - 107 194 IPR013088 GO:0006355|GO:0008270
Pste8g00538 255 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 20 254 - -
Pste8g00538 255 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 111 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00538 Pste-Chr8 2777434 2782812 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00538 59 254 C2C2-Gata Transcription Factor Family AT4G26150 34.529 7.43e-31 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pste8g00538 GATA 2.1e-16 CL0167