Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00518 GTAAAAGACAGAAAGTGCATTTCAGAAGAAGCCAGTTTGGCTTGTGTTTTGGTCTCTTGTACGTGCGAGCTTCAAACACTTCCTTTTCCTCATCCTCATTCTTCCAACCTCTCCCCCTCTCTCTCTCTCTCTCCCCTCACACACAACTGAAACTTCCTCAACTACTATTCTTAGCATTCAATTCTCTTGAAGCATATATACTTTGGTGATGCTAATAGCTAGCAATACTTGCCAACAAGGTGTGGTGTTTATATTAATTAAGAGTTCATTAAAGTTGCTAGCTATATATATTGAAGTCAATCCATCTCGGGATCCATTCACCTTTCACAGCTTTTTCCTCTTTATCTCTCTCTCTCTCTCAAGAATATCTGAAAAGTTTTGAAGAATTGAGAAAGCTATATATCTAAGAGAGTGAAGAAGATCAGATCCATTAATTCCCTATCATATATATTATCCTTTTCAGTTGGAAGAAAACATGTCCAATTTGACTTCAACATCGAGTGAAATAAGTGCTTCTTCTGGAATCAGAAATGACAACGGTTCTCTCTATGCTCAATATTCCTCTACTTCAATAAGTCAAGAACCACAACCTAAAAAGAAGCGTAGTCTTCCAGGTCACCCAGATCCTGAGGCAGAAGTGATAGCATTGAGTCCACAGACCCTTTTGGCAACAAACAGGTTCGTTTGTGAGATTTGTCACAAAGGGTTTCAAAGAGATCAGAATCTGCAGCTTCACAGAAGAGGGCACAATCTGCCATGGAAGCTGAAGAAGAAGAACAGCAAAGAGGCAAAGAAGAAAGTGTATGTGTGCCCAGAGGCAACTTGTGTGCACCATGACCCTTCAAGGGCACTTGGGGACCTCACTGGAATCAAGAAACACTTTTTCAGGAAACATGGAGAGAAGAAATGGAAGTGTGAGAAGTGCTCCAAACGTTACGCGGTTCAATCAGATTGGAAAGCACACTCCAAAATTTGTGGCACCAGAGAATACAGATGTGACTGTGGTACCATTTTCTCTAGGTAA 1024 0.4072 MSNLTSTSSEISASSGIRNDNGSLYAQYSSTSISQEPQPKKKRSLPGHPDPEAEVIALSPQTLLATNRFVCEICHKGFQRDQNLQLHRRGHNLPWKLKKKNSKEAKKKVYVCPEATCVHHDPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTREYRCDCGTIFSR 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00518 182 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 182 IPR031140 -
Pste8g00518 182 Gene3D Classic Zinc Finger 65 92 - -
Pste8g00518 182 MobiDBLite consensus disorder prediction 1 52 - -
Pste8g00518 182 FunFam protein indeterminate-domain 12-like 48 116 - -
Pste8g00518 182 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 91 IPR013087 -
Pste8g00518 182 SMART c2h2final6 69 91 IPR013087 -
Pste8g00518 182 SMART c2h2final6 110 140 IPR013087 -
Pste8g00518 182 SMART c2h2final6 145 165 IPR013087 -
Pste8g00518 182 MobiDBLite consensus disorder prediction 1 39 - -
Pste8g00518 182 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
Pste8g00518 182 SUPERFAMILY beta-beta-alpha zinc fingers 68 165 IPR036236 -
Pste8g00518 182 Gene3D Classic Zinc Finger 93 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00518 Pste-Chr8 2679689 2681334 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00518 20 182 IDZ Gene Family AT3G50700 78.947 7.32e-99 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste8g00518 None None None