Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00499 CTTTAAGAAAAAAAAAAAAAACACAGCTTACTAAAATATCTTAGGATTCCATGGGTCATCATGCGTCCAATTTTTCACCTTTCACTTGAACACATACAGAAAAAAATCAACGCAACCATTAACTGTTAATTTATTAAGCATACTAGATTATGAATTAGTACTTGTGCTGTGTCTCTGAAACTAAACTAAACTCTTAATTATTTTTTTTAATTATCTTGTCTCTGGTGTTGATACATGGAGGGCGTTGGAGTGAAGGAGGAAGAAACCGTGACATGTGGGGTGAGTGATTCATCTTCATCTTCATCTTTAAGCTTTTCATCTCCACGGCCCATGGAAGGGTTGCACGATGTGGGACCTCCTCCGTTTCTGACAAAGATCTTTGACATGGTGGAAGATCCTTCCACGGACTCTATTGTGTCATGGAGTGCTACTCGTAACAGCTTTGTGGTGTGGGACTCTCACAAGTTTTCCACTCTTATTCTACCTCGTTACTTCAAACACAGCAATTTCTCCAGCTTCATTCGCCAGCTCAACACCTATGGATTTAGGAAAGTTGATCCTGATAGATGGGAATTTGCGAATGAAGGCTTTTTAGCAGGACAAAGGCACTTATTGAAGACCATCAAGAGAAGAAGAAATGTGTCACAGAATATGCAACAACGAGGAGGGGGTGGAGCTTGTGTTGAAGTAGGGGAGTTTGGACTAGAAGGCGAGTTGGAGAGGTTGAAGAGAGATAGGAACATTTTGATGGCAGAAGTTGTGAGGTTGAGGCAACAACAGTTGAACTCAAAGGACCAATTGAGTGCCATAGAGGCTAGATTGCAAGCCACAGAGAAGAAACAACAACAAATGATGGCTTTCCTGGCCAAAGCACTAAGTAACTCATCTTTCATGCAGCAATTAGTCCACAAGAGTCCTCAAAGCAGAGAAGTGTTGGGTGTTGAAATCAATAGGAAAAGGAGACTAATTGCTAGCCCAAGTTTGGAGAACTTGCAACAAGATGATCCTGCAGCATTGGTCGACTATCCAAGCAATGATCAAGATTTGGCTACTATGGAACCTCAAATTGACACTTTTTTCTTACCAACTTTTGATAGTGAACTTAGAAGTGAAATCAAAGAGCCTGCACCTAGTTCCATACCAGCTGAAGGGAGTGACTTTGGTTCAATTGGGGATACAATCTTAGAGGACTTTCTCAACAAGAACTTGGTTACTGGGAATCCAAAGGATGAAGTTATAATTGGTGATTATCCCCAAGTAGATGATGTGCCAGTGGAGGATTTGATAGAAAACTCTGATGATTGGAGTGAACAATTGCAGGACCTTGTGGATCATTTGGACTATCTTGGGTCCAAACCATAGAGGGATGCAAAGTCTACTATTATCATGTCCTAAACTTGGTCTCTTTCATTTCATTTACATTGCATCATGGTGGTATAATTTGGTACTTTTGTTACTATTTTTTGTTTTGGTTTCAATTTTATGTGATGTTAATGAAAAATGTGAATTGGTTTTATGCTGCAGGGAAGGTGGTAGTTGCGGAAGGAATCAACAGATACTACTGCTGTTATTTGGATCCTTTATTGAGTTTTATAAATATTCATTGTGCTAAATCATTTATTATTATCAGGATGACCTATTTGTTTGTATTTTATGTCATGCAGGAGAGATCAATTGGGGTACATGAAGGTTTTGATCCAAATAATTTACAGAAAATTGGCTGAATCTTCATTGTTCAGGAGGTTGAAAACTATCATGTAGTTCTTCTTGTACGATTGACCTTGCATTGGAACTACATTTGTTCCCATTCTTTTGCCCGCAAAATTGGAAATTGTTGGTACTTTTTTTTCTATTATTAAGTGAATAATTGAATTTATTCGTCACCACTTCTGGATCCGTAGATAATTTGTGCAATGTCATCTCCTCTGTATTAACTCCATAGCATTATATTAGTGCAAGAATTGGCAGTGTGTATTGTGTAATGGTAAATTTTGGCCATGATAGCACCTCCAAAGGGACTGGAACAAACGTTGAAATATTTCAATTGAGGAACCATTGAAGTCTATTAATTCCCAATTGAGAAATTTTTTGGTGCGTGTGGCCCAATTGGAAAATTCAGTAGTTTCTAGCTAAAAACAAGAAAGAGAGACACAATCTTTGTGTGATGTGAGTAATAAGATCTCAAATTGAAACAATGGTTGTCATTCTGCTATT 2214 0.3812 MEGVGVKEEETVTCGVSDSSSSSSLSFSSPRPMEGLHDVGPPPFLTKIFDMVEDPSTDSIVSWSATRNSFVVWDSHKFSTLILPRYFKHSNFSSFIRQLNTYGFRKVDPDRWEFANEGFLAGQRHLLKTIKRRRNVSQNMQQRGGGGACVEVGEFGLEGELERLKRDRNILMAEVVRLRQQQLNSKDQLSAIEARLQATEKKQQQMMAFLAKALSNSSFMQQLVHKSPQSREVLGVEINRKRRLIASPSLENLQQDDPAALVDYPSNDQDLATMEPQIDTFFLPTFDSELRSEIKEPAPSSIPAEGSDFGSIGDTILEDFLNKNLVTGNPKDEVIIGDYPQVDDVPVEDLIENSDDWSEQLQDLVDHLDYLGSKP 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00499 375 SUPERFAMILY "Winged helix" DNA-binding domain 40 133 IPR036390 -
Pste8g00499 375 PRINTS Heat shock factor (HSF) domain signature 95 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste8g00499 375 PRINTS Heat shock factor (HSF) domain signature 44 67 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste8g00499 375 PRINTS Heat shock factor (HSF) domain signature 82 94 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste8g00499 375 SMART hsfneu3 40 133 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste8g00499 375 ProSitePatterns HSF-type DNA-binding domain signature. 83 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste8g00499 375 Gene3D - 37 134 IPR036388 -
Pste8g00499 375 MobiDBLite consensus disorder prediction 1 32 - -
Pste8g00499 375 FunFam Heat shock transcription factor 1 37 134 - -
Pste8g00499 375 MobiDBLite consensus disorder prediction 13 30 - -
Pste8g00499 375 Pfam HSF-type DNA-binding 44 133 IPR000232 GO:0003700|GO:0006355|GO:0043565
Pste8g00499 375 Coils Coil 161 181 - -
Pste8g00499 375 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 30 267 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00499 Pste-Chr8 2595415 2600261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00499 11 375 HSF AT2G26150 52.589 8.52e-127 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Pste8g00499 HSF_DNA-bind 4.2e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g00499 8 2595415 2600261 Pste2g01313 2 14470516 14472548 PCT