Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pste8g00481 | GAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGGTTCCTTTTTGGTGTTTGGGAAAGTATGAGGAGAGCGAAGTGGAAGGAGAAGGAGAAGGAGAAGGAGGTTCGTAAGCAACAGCGAGTCTCGGAGGAAGAAGAGATAAAGCTGTTGAATTCATGGATCCACTCCCATCCACCGGACTCCGGTTCCCATCCGATCTCTCTCCCCGTCGGCCTCCTCCCTGACAACACCCACTCGCCCTACGCCGGCGCCTCCCGCTTCGACCATCTCCCCCTCTCCACTAAGACCAAGGCCGCCCTCCGACAAGCCAGCTTCGTGGTGATGACCGACATCCAGAGAGCCTCTCTCCCACACTCTCTCTGTTCCCGCGACATCCTCGGCGCCGCCAAAACTGGCTCCGGTAAAACCCTCTCTTTCATCATCCCTGTTTTGGAGAAGTTGTATAGAGAGAGATGGGGACCTGAAGATGGGGTTGGCAGCATCATCATATCGCCTACAAGAGAATTGGCTGCCCAGTTATTTGATGTTTTAAAGGTTGTCGGCAAACACCATAACTTTAGTGCTGGGCTTCTCATTGGTGGTCGTAAGGACATCGACGTCGAGAAACAACGTGTTAATGACCTCAACATATTGATCTGCACACCTGGTCGCTTGCTACAACACATGGATCAAACTCCCAATTTTGATTGTTCACACTTGCAGATTTTGGTACTAGATGAGGCTGATCGGATTCTGGACAGTGGATTCAAGAAGGAACTAAATGCAATCATTTCTCAACTGCCAAAGCGAAGACAAACCTTGCTTTTCTCTGCAACTCAGACAAAGTCAATTCAAGATCTTGCAAGGCTAAGTTTGAAGGATCCAGAGTATTTGAGTGTGCATGAAGAATCAATGACTGCCACTCCTTCACTGTTAAAGCAAATTGTGATGGTTGTTCCCCTGGATCAAAAGTTGGATATGCTCTGGAGTTTCATAAAGACACATCTACAGTCAAAAATACTTGTCTTTCTTTCAAGCTGTAAACAGGTAAAATTTGTCTTCGAAGCATTCAAGAAGCTGCACCCTGGCATACCATTGAAATGCCTTCATGGAAGGATGAAACAGGAAAGAAGAATGGCAATATATTCTGAGTTTTGTGAGAAGCGCTCAGTTCTCTTCTCAACTGATGTTGCCGCAAGAGGTCTTGATTTTAATAAGGCAGTTGATTGGGTTGTCCAGGTCGATTGTCCTGAAAATGTTGCTTCTTACATACATAGAGTTGGTCGCACTGCTCGGTATAAATCTGGTGGAAAGTCTGTTTTATTTTTGTTGCCTTCAGAAATTCAAATGCTGGAAAAGTTAAAAGCTGCAAAGGTCCCAGTGCATTTTAACAAGCCCAGGCAAGAACTAATGCAACCAGTTTCTAGTTTGTTGGCATCTTTACTGGTCAAATATCCAGATCTGCAGCATCGGGCTCAGAGGGCTTTTGTTACATATTTGAGATCCATCCATATCCAAAAGGATAAAGACATATTTGATGTTATGAAACTACCTATTGACCAGTATTCAGCATCATTAGGTTTACCGATGACCCCCAAAATCCGTTTTCTAAACCAGAAAATTAAATCGAAAGCTGTTTCAACAAAATCAATTCTAGTTGAACCAGAAGATTCAAACAAGGATAATGTCTTGGAGATTTCAAGAAAGAAGCTAGACACCGATACTTCCAAGGATGAGGAAACTGAAAATGATCTTCTTCAGTTAGCAGATACCTCAAATGAAGGCGAAGTAAAGTCATCTGAAGTTGAAGAAATTATACTGGCAACTCGTGTATTGAAGAAAAAGAAGCTCAAGATTAATGTACATAGGCCAGTTGGGACTAGGGTTGTATTTGACGAAGAAGGCAACACACTTCCTCCGCTAGCCAGGATAGCTGATACCCAAAGTGGCAAAGAAGCATTGCTGCTGGACCCAGAACAAAAAGCTGAATACTATAGAAGGATGCGAGATGATTTGAAGAAGGCTGACAAAGAAGACAAGCTTATTGAGCGACAGCGACGCAGAGAAAAAAGAATAAAGCAGAAGATGAAATGGAAGGCAGAAGATGATATATCTGGGTCAGAAGGAGACGAAAACGAAACTGTTGATAGACAGCATAAAAAGAGTAAAGTATACTTTGCTAGTGACAGTGACAGTGACAGTGACAGGGAAGAGGGTGAAAGAAATGGCGCCGTTACATTAGAGGAGCAAGAAGCCCTGGCTTTGAAATTGTTAAACTCCATGCACTCATGAACTCACGTTTAATCAGTCATGAAATATGGAGGATATAGAATTAGAATCATCAATTTTCTACTTTTATTTATTTTAACAAACGCAATCCATTAGTACTGTATTAAATTTTTTCCATAAATTATCAGTAATTAACTTATAATATATGGTTTTTTAAGTAGCCATA | 2484 | 0.4259 | MRRAKWKEKEKEKEVRKQQRVSEEEEIKLLNSWIHSHPPDSGSHPISLPVGLLPDNTHSPYAGASRFDHLPLSTKTKAALRQASFVVMTDIQRASLPHSLCSRDILGAAKTGSGKTLSFIIPVLEKLYRERWGPEDGVGSIIISPTRELAAQLFDVLKVVGKHHNFSAGLLIGGRKDIDVEKQRVNDLNILICTPGRLLQHMDQTPNFDCSHLQILVLDEADRILDSGFKKELNAIISQLPKRRQTLLFSATQTKSIQDLARLSLKDPEYLSVHEESMTATPSLLKQIVMVVPLDQKLDMLWSFIKTHLQSKILVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSGGKSVLFLLPSEIQMLEKLKAAKVPVHFNKPRQELMQPVSSLLASLLVKYPDLQHRAQRAFVTYLRSIHIQKDKDIFDVMKLPIDQYSASLGLPMTPKIRFLNQKIKSKAVSTKSILVEPEDSNKDNVLEISRKKLDTDTSKDEETENDLLQLADTSNEGEVKSSEVEEIILATRVLKKKKLKINVHRPVGTRVVFDEEGNTLPPLARIADTQSGKEALLLDPEQKAEYYRRMRDDLKKADKEDKLIERQRRREKRIKQKMKWKAEDDISGSEGDENETVDRQHKKSKVYFASDSDSDSDREEGERNGAVTLEEQEALALKLLNSMHS | 736 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pste8g00481 | 736 | Pfam | Helicase conserved C-terminal domain | 297 | 406 | IPR001650 | - | |
Pste8g00481 | 736 | Gene3D | - | 282 | 527 | IPR027417 | - | |
Pste8g00481 | 736 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 65 | 93 | IPR014014 | GO:0003724 | |
Pste8g00481 | 736 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 137 | 426 | IPR027417 | - | |
Pste8g00481 | 736 | CDD | SF2_C_DEAD | 285 | 416 | - | - | |
Pste8g00481 | 736 | MobiDBLite | consensus disorder prediction | 668 | 718 | - | - | |
Pste8g00481 | 736 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 293 | 451 | IPR001650 | - | |
Pste8g00481 | 736 | MobiDBLite | consensus disorder prediction | 544 | 566 | - | - | |
Pste8g00481 | 736 | MobiDBLite | consensus disorder prediction | 665 | 720 | - | - | |
Pste8g00481 | 736 | Pfam | Domain of unknown function (DUF4217) | 450 | 507 | IPR025313 | - | |
Pste8g00481 | 736 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Pste8g00481 | 736 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 217 | 225 | IPR000629 | - | |
Pste8g00481 | 736 | Pfam | DEAD/DEAH box helicase | 89 | 259 | IPR011545 | GO:0003676|GO:0005524 | |
Pste8g00481 | 736 | SMART | DUF4217_3 | 446 | 509 | IPR025313 | - | |
Pste8g00481 | 736 | Gene3D | - | 54 | 277 | IPR027417 | - | |
Pste8g00481 | 736 | SMART | helicmild6 | 324 | 407 | IPR001650 | - | |
Pste8g00481 | 736 | SMART | ultradead3 | 84 | 288 | IPR014001 | - | |
Pste8g00481 | 736 | CDD | DEADc_DDX10 | 76 | 274 | - | - | |
Pste8g00481 | 736 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 96 | 271 | IPR014001 | - | |
Pste8g00481 | 736 | PANTHER | RNA HELICASE | 23 | 560 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pste8g00481 | Pste-Chr8 | 2519832 | 2524325 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pste8g00481 | 92 | 428 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 29.825 | 1.39e-36 | 140 |