Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00481 GAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGAAGGAGGTTCCTTTTTGGTGTTTGGGAAAGTATGAGGAGAGCGAAGTGGAAGGAGAAGGAGAAGGAGAAGGAGGTTCGTAAGCAACAGCGAGTCTCGGAGGAAGAAGAGATAAAGCTGTTGAATTCATGGATCCACTCCCATCCACCGGACTCCGGTTCCCATCCGATCTCTCTCCCCGTCGGCCTCCTCCCTGACAACACCCACTCGCCCTACGCCGGCGCCTCCCGCTTCGACCATCTCCCCCTCTCCACTAAGACCAAGGCCGCCCTCCGACAAGCCAGCTTCGTGGTGATGACCGACATCCAGAGAGCCTCTCTCCCACACTCTCTCTGTTCCCGCGACATCCTCGGCGCCGCCAAAACTGGCTCCGGTAAAACCCTCTCTTTCATCATCCCTGTTTTGGAGAAGTTGTATAGAGAGAGATGGGGACCTGAAGATGGGGTTGGCAGCATCATCATATCGCCTACAAGAGAATTGGCTGCCCAGTTATTTGATGTTTTAAAGGTTGTCGGCAAACACCATAACTTTAGTGCTGGGCTTCTCATTGGTGGTCGTAAGGACATCGACGTCGAGAAACAACGTGTTAATGACCTCAACATATTGATCTGCACACCTGGTCGCTTGCTACAACACATGGATCAAACTCCCAATTTTGATTGTTCACACTTGCAGATTTTGGTACTAGATGAGGCTGATCGGATTCTGGACAGTGGATTCAAGAAGGAACTAAATGCAATCATTTCTCAACTGCCAAAGCGAAGACAAACCTTGCTTTTCTCTGCAACTCAGACAAAGTCAATTCAAGATCTTGCAAGGCTAAGTTTGAAGGATCCAGAGTATTTGAGTGTGCATGAAGAATCAATGACTGCCACTCCTTCACTGTTAAAGCAAATTGTGATGGTTGTTCCCCTGGATCAAAAGTTGGATATGCTCTGGAGTTTCATAAAGACACATCTACAGTCAAAAATACTTGTCTTTCTTTCAAGCTGTAAACAGGTAAAATTTGTCTTCGAAGCATTCAAGAAGCTGCACCCTGGCATACCATTGAAATGCCTTCATGGAAGGATGAAACAGGAAAGAAGAATGGCAATATATTCTGAGTTTTGTGAGAAGCGCTCAGTTCTCTTCTCAACTGATGTTGCCGCAAGAGGTCTTGATTTTAATAAGGCAGTTGATTGGGTTGTCCAGGTCGATTGTCCTGAAAATGTTGCTTCTTACATACATAGAGTTGGTCGCACTGCTCGGTATAAATCTGGTGGAAAGTCTGTTTTATTTTTGTTGCCTTCAGAAATTCAAATGCTGGAAAAGTTAAAAGCTGCAAAGGTCCCAGTGCATTTTAACAAGCCCAGGCAAGAACTAATGCAACCAGTTTCTAGTTTGTTGGCATCTTTACTGGTCAAATATCCAGATCTGCAGCATCGGGCTCAGAGGGCTTTTGTTACATATTTGAGATCCATCCATATCCAAAAGGATAAAGACATATTTGATGTTATGAAACTACCTATTGACCAGTATTCAGCATCATTAGGTTTACCGATGACCCCCAAAATCCGTTTTCTAAACCAGAAAATTAAATCGAAAGCTGTTTCAACAAAATCAATTCTAGTTGAACCAGAAGATTCAAACAAGGATAATGTCTTGGAGATTTCAAGAAAGAAGCTAGACACCGATACTTCCAAGGATGAGGAAACTGAAAATGATCTTCTTCAGTTAGCAGATACCTCAAATGAAGGCGAAGTAAAGTCATCTGAAGTTGAAGAAATTATACTGGCAACTCGTGTATTGAAGAAAAAGAAGCTCAAGATTAATGTACATAGGCCAGTTGGGACTAGGGTTGTATTTGACGAAGAAGGCAACACACTTCCTCCGCTAGCCAGGATAGCTGATACCCAAAGTGGCAAAGAAGCATTGCTGCTGGACCCAGAACAAAAAGCTGAATACTATAGAAGGATGCGAGATGATTTGAAGAAGGCTGACAAAGAAGACAAGCTTATTGAGCGACAGCGACGCAGAGAAAAAAGAATAAAGCAGAAGATGAAATGGAAGGCAGAAGATGATATATCTGGGTCAGAAGGAGACGAAAACGAAACTGTTGATAGACAGCATAAAAAGAGTAAAGTATACTTTGCTAGTGACAGTGACAGTGACAGTGACAGGGAAGAGGGTGAAAGAAATGGCGCCGTTACATTAGAGGAGCAAGAAGCCCTGGCTTTGAAATTGTTAAACTCCATGCACTCATGAACTCACGTTTAATCAGTCATGAAATATGGAGGATATAGAATTAGAATCATCAATTTTCTACTTTTATTTATTTTAACAAACGCAATCCATTAGTACTGTATTAAATTTTTTCCATAAATTATCAGTAATTAACTTATAATATATGGTTTTTTAAGTAGCCATA 2484 0.4259 MRRAKWKEKEKEKEVRKQQRVSEEEEIKLLNSWIHSHPPDSGSHPISLPVGLLPDNTHSPYAGASRFDHLPLSTKTKAALRQASFVVMTDIQRASLPHSLCSRDILGAAKTGSGKTLSFIIPVLEKLYRERWGPEDGVGSIIISPTRELAAQLFDVLKVVGKHHNFSAGLLIGGRKDIDVEKQRVNDLNILICTPGRLLQHMDQTPNFDCSHLQILVLDEADRILDSGFKKELNAIISQLPKRRQTLLFSATQTKSIQDLARLSLKDPEYLSVHEESMTATPSLLKQIVMVVPLDQKLDMLWSFIKTHLQSKILVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSGGKSVLFLLPSEIQMLEKLKAAKVPVHFNKPRQELMQPVSSLLASLLVKYPDLQHRAQRAFVTYLRSIHIQKDKDIFDVMKLPIDQYSASLGLPMTPKIRFLNQKIKSKAVSTKSILVEPEDSNKDNVLEISRKKLDTDTSKDEETENDLLQLADTSNEGEVKSSEVEEIILATRVLKKKKLKINVHRPVGTRVVFDEEGNTLPPLARIADTQSGKEALLLDPEQKAEYYRRMRDDLKKADKEDKLIERQRRREKRIKQKMKWKAEDDISGSEGDENETVDRQHKKSKVYFASDSDSDSDREEGERNGAVTLEEQEALALKLLNSMHS 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00481 736 Pfam Helicase conserved C-terminal domain 297 406 IPR001650 -
Pste8g00481 736 Gene3D - 282 527 IPR027417 -
Pste8g00481 736 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 65 93 IPR014014 GO:0003724
Pste8g00481 736 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 137 426 IPR027417 -
Pste8g00481 736 CDD SF2_C_DEAD 285 416 - -
Pste8g00481 736 MobiDBLite consensus disorder prediction 668 718 - -
Pste8g00481 736 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 293 451 IPR001650 -
Pste8g00481 736 MobiDBLite consensus disorder prediction 544 566 - -
Pste8g00481 736 MobiDBLite consensus disorder prediction 665 720 - -
Pste8g00481 736 Pfam Domain of unknown function (DUF4217) 450 507 IPR025313 -
Pste8g00481 736 MobiDBLite consensus disorder prediction 1 21 - -
Pste8g00481 736 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 217 225 IPR000629 -
Pste8g00481 736 Pfam DEAD/DEAH box helicase 89 259 IPR011545 GO:0003676|GO:0005524
Pste8g00481 736 SMART DUF4217_3 446 509 IPR025313 -
Pste8g00481 736 Gene3D - 54 277 IPR027417 -
Pste8g00481 736 SMART helicmild6 324 407 IPR001650 -
Pste8g00481 736 SMART ultradead3 84 288 IPR014001 -
Pste8g00481 736 CDD DEADc_DDX10 76 274 - -
Pste8g00481 736 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 96 271 IPR014001 -
Pste8g00481 736 PANTHER RNA HELICASE 23 560 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00481 Pste-Chr8 2519832 2524325 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00481 92 428 Eukaryotic Initiation Factors Gene Family AT3G19760 29.825 1.39e-36 140