Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00457 ATGTCTTTATGGATTTCAAAGGTCGCAGAAAAGCCTTGATTAAAGCCCTCACCACTGATGTTAAAGAGTTTTATCAGCAGTGCGATCCTGAGAAGGAAAATCTTTGCCTTTATGGATTTCCTAATGAGAAGTGGGAAGTCAATTTACCAGCTGAAGAGGTTCCTCCAGAGCTTCCTGAGCCAGTATTAGGCATCAACTTTGCTAGAGATGGGATGCGAAAAAATGTGTGGCTGTCTTTTATTGCTGTACACAGTGATGCTTGGTTACATGCTGTGGCTTTCTATTTTGGTGCTAGGTTTGGATTTGACAAGGCTGATAGGAATCGATTATTTAATATGATAAATGATCTTCCAACAATATTAGAAGTTGTGGCAGGGGCGGCTAAGAAAAAAGGAAAGGAAAAGCCGTCAGTTTCAAACCACAACAATAACAAATTTAAGTCAAAATCTAAGGGAGGTTCTGAACCAAGGTACTCTAAAGCAAAGCAATCCAAGGATGATGATGATGAGGGTGTGGGTTTGGAAGAGGAAGACAAAGATGAAAATGACAAGAGTATGTGTGGGGCATGTGGGGAGAAATATGTTGCTGATGAGTTTTGGATTTGCTGCGACATCTGTGACACATGGTTTCATGGAAAATGTGTCAAGATTACACCTGCAAGGGCTGAACATATCAAGCAATACAAATTTGTAATTGTGCTGTGTCCA 707 0.4045 MDFKGRRKALIKALTTDVKEFYQQCDPEKENLCLYGFPNEKWEVNLPAEEVPPELPEPVLGINFARDGMRKNVWLSFIAVHSDAWLHAVAFYFGARFGFDKADRNRLFNMINDLPTILEVVAGAAKKKGKEKPSVSNHNNNKFKSKSKGGSEPRYSKAKQSKDDDDEGVGLEEEDKDENDKSMCGACGEKYVADEFWICCDICDTWFHGKCVKITPARAEHIKQYKFVIVLCP 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00457 233 SUPERFAMILY FYVE/PHD zinc finger 173 225 IPR011011 -
Pste8g00457 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 173 229 IPR013083 -
Pste8g00457 233 PANTHER CPG BINDING PROTEIN 2 226 IPR045104 GO:0006355|GO:0042393
Pste8g00457 233 CDD PHD_AL_plant 184 233 IPR044104 -
Pste8g00457 233 Pfam Alfin 2 122 IPR021998 GO:0006355|GO:0042393
Pste8g00457 233 Pfam PHD-finger 183 226 IPR019787 -
Pste8g00457 233 MobiDBLite consensus disorder prediction 129 181 - -
Pste8g00457 233 SMART PHD_3 183 233 IPR001965 -
Pste8g00457 233 FunFam PHD finger alfin-like protein 176 233 - -
Pste8g00457 233 MobiDBLite consensus disorder prediction 145 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00457 Pste-Chr8 2416287 2425767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00457 2 226 Alfin-like Transcription Factor Family AT3G42790 69.027 1.36e-96 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Pste8g00457 Alfin 1.4e-62 No_clan