Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00442 ATGTCTGGTAGGTGTGCAGCTTGCAAGAATCAAAGAAGAAGATGTCCTTCAGATTGCATTTTCTCTCCATATTTCCCTGCCAATGATCCTCAAAGATTTGCTTGCGTTCACAGAATCTATGGTGGCAGCAACATTGGAAAAATGCTTCAGCAAATTCCACCGTACTTGCGTGAACAAACTGCAAATACTTTATATTATGAAGCACAATGTAGAATTCAAGATCCTGTATATGGATGTGCAGGAATTATCTCTAAATTATATGAACAAATCCACGATTCAGAAATTGAACTTGTTCAACTCCAAACTCAGATTGTTCGTAACAAGCTTCGATTGCCGCAAGAGAGAGGAGAATCAAGCTTTAATATCTCGACTACAACTGAAGTTGAATCAAACTTTAATCCCTTATCAGCAAAAAGCAGTAACCCAGCAGGATTTCAATTGCCTAATAATAAAGTTTTATGGTTTCCTTAG 471 0.3737 MSGRCAACKNQRRRCPSDCIFSPYFPANDPQRFACVHRIYGGSNIGKMLQQIPPYLREQTANTLYYEAQCRIQDPVYGCAGIISKLYEQIHDSEIELVQLQTQIVRNKLRLPQERGESSFNISTTTEVESNFNPLSAKSSNPAGFQLPNNKVLWFP 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00442 156 Coils Coil 83 103 - -
Pste8g00442 156 Pfam Lateral organ boundaries (LOB) domain 4 101 IPR004883 -
Pste8g00442 156 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 122 - -
Pste8g00442 156 ProSiteProfiles LOB domain profile. 3 104 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00442 Pste-Chr8 2341265 2341895 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00442 4 113 AS2 family AT3G26660 57.273 2.69e-45 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Pste8g00442 LOB 4.3e-37 No_clan