Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00439 ATAGAAAATATTAAGAGCGTTAGAAAAAGAAAAAAAATGGGGTGGGGTCACCTTGGAAGACATGGCTCAGATTCCGGCGACATTGCGGAGGCTGGTCCGAGCACCTCCGCCACCGTGCCACGGCAGTTCCCACTGGCGGCTCAGCCGGAAATGATGCGCGCCGCCGAGAAGGACGATCAATACGCCTCGTTCGTCTACGAAGCCTGTCGCGACGCCTTTCGCCACCTCTTTGGTACCAGAGTAACGGTGGCTTACCAAAACGAGACGAAACTTTTAGGTCAGATGCTTTACTATGTTCTCACTACTGGCTCGGGACAGCAAACCCTTGGAGAGGAATACTGCGACATCACTCAGGTTGCAGGACCTTATGGACTTCCTCCCACCCCTGCCAGGCGGGCTCTTTTCGTTGTATATCAGACAGCTATTCCATATATTGCTGAGCGAATTAGTTCTAGAATTGCTTCCCGTGGCATCATCCTTGCTGACTCAGAATCTGCTGAGGGTTTTGGTGAAAATGCCCACCGGGGTGCCAGTTCTCAGATTTCTGGTGCCAGTTCTTCATCCTTGTCAGGACAATCTGTTACTACTCTGTCAAGATTGAAGGGGAAATTGAGTGTATTTTGGTTGCATTTGGTTCAGAGATGGCCTACGATGCTCCCTTTTGTTCGTGAGTTGATGCAGTTGGTTCTTCGTGCTAACCTTATGTTATTCTACTTTGAAGGCCTCTATTATCATATATCCAAACGTGCTGCAGGCATTCGTTATGTTTTTATTGGAAAAGCATCAAATCAAAGACCTAGATACAAAATACTAGGAGTATTTCTGTTGATTCAACTTTGTATAATAGCTGCTGAAGGGCTGCGTCGAAGAAATTTTACTTCAATTGCTGGTTCAGTTCATCAAGCATCCTTTGGAACCCACGATAGATCAGCAGGGCACGGTTTGCCTGTTTTAAATGAAGAGGGTACCCTGGCAACTCCAGATATTGACAAAGGAAGTTGGATCTCTGATTCTTCTTCTTCTGAGTATCATGCAACTAGTGGGGTTAGCAAATGTACACTTTGCCTGAGTAATCGTCAGCACCCAACTGCGACTTCATGTGGCCATGTATTCTGCTGGAACTGTATCACGGAATGGTGCAACGAAAAGCCAGAGTGCCCTCTTTGCCGCACCCCCATAACACATTCAAGTCTAGTCTGTGTATATCATTCGGACTTCTAGAATCTGCTCCTCGTCAGCGGCGATCTTTATGTACATATATAAAATTATAAAATATTAGAAGATAGCATCAAAGGCAACATTTTCTTCGTCTTGGATCTTACAAGGATTGTATGAACATTTGAGGAATTCAATTTTGTATTAGGATTTAGTATTATGTCCAAGTTTTATCCCAATTCTTATATAGTCTTGTAATGAGCTGAATATTCTTTTCATTGTTGGGAAATATAACAATTATTTAAAGCACAACTATCACTGGAAGGTCATTCTGCATTAATTATAAAAACAAGAGGCTTCTAATGAGATTTATATCACAAACCTTTTGCTCATATTCTGTTTTAGAAAC 1564 0.4309 IENIKSVRKRKKMGWGHLGRHGSDSGDIAEAGPSTSATVPRQFPLAAQPEMMRAAEKDDQYASFVYEACRDAFRHLFGTRVTVAYQNETKLLGQMLYYVLTTGSGQQTLGEEYCDITQVAGPYGLPPTPARRALFVVYQTAIPYIAERISSRIASRGIILADSESAEGFGENAHRGASSQISGASSSSLSGQSVTTLSRLKGKLSVFWLHLVQRWPTMLPFVRELMQLVLRANLMLFYFEGLYYHISKRAAGIRYVFIGKASNQRPRYKILGVFLLIQLCIIAAEGLRRRNFTSIAGSVHQASFGTHDRSAGHGLPVLNEEGTLATPDIDKGSWISDSSSSEYHATSGVSKCTLCLSNRQHPTATSCGHVFCWNCITEWCNEKPECPLCRTPITHSSLVCVYHSDF 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00439 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 330 403 IPR013083 -
Pste8g00439 406 MobiDBLite consensus disorder prediction 12 40 - -
Pste8g00439 406 FunFam Peroxisome biogenesis factor 10 327 403 - -
Pste8g00439 406 MobiDBLite consensus disorder prediction 175 190 - -
Pste8g00439 406 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 44 404 IPR025654 GO:0005778|GO:0007031|GO:0008270|GO:0016558
Pste8g00439 406 CDD RING-HC_PEX10 350 401 - -
Pste8g00439 406 Pfam Pex2 / Pex12 amino terminal region 58 289 IPR006845 -
Pste8g00439 406 SUPERFAMILY RING/U-box 351 395 - -
Pste8g00439 406 SMART ring_2 352 389 IPR001841 -
Pste8g00439 406 MobiDBLite consensus disorder prediction 171 190 - -
Pste8g00439 406 ProSitePatterns Zinc finger RING-type signature. 367 376 IPR017907 -
Pste8g00439 406 Pfam Zinc finger, C3HC4 type (RING finger) 351 395 - -
Pste8g00439 406 ProSiteProfiles Zinc finger RING-type profile. 352 390 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00439 Pste-Chr8 2310042 2314168 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00439 337 402 C3H Transcription Factor Family AT4G28270 29.268 4.94e-10 57.0