Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00411 ATGTGTTTGAACTTGATGGATCAGTATCAGGTAGGGAGACCTCCTGTGAAGCTCCATCAAGGATGCCTCTGTCACGCTCTTTTCTATTTTGAGAGGCCATTTGTGTGTTCTCTCCATGATTGTCAGGCAAGTTACAGAAGGAAGGATCACCTTACACGGCACCTTTTACAGCATCAAGGGAAGACTTTTAAGTGCCCTATTGGAGATTGCAACATTTATTTCTCTTTGCAAAGCAATATGAAAAGACATGTCGAGGAGATTCATAATGGCTCTTCTTCCTCTACCATTGACAAAAGTCACAAAGAGCATGTGTGTCCTGAGATGGGCTGTGGAAAAGTTTTCAGATATGCATCACAGCTACAGAAGCATGAGGATTCTCATGTTAAGTTGGAATCAATAGATGTGGTGTGCTTAGAGCCTGGTTGCTTGAAGCATTTTGCTAATGTCCAGTGCCTTCAAGCCCATGTAAAGTCCTTCCATCAATATATAACCTGTGACATTTGTGGTAGTAAGCAGCTGAAGAAGAACATTAAGCGACACTTTCGTTCACATGAAGCGGACAGCAGTTCATCCCCAGAGACCTTTCAATGCGAGTTTAAGGGTTGTAGCTGCACATTTTCAAGAAAATCTAATCTTGATAAGCATAAGAAGGCTGTGCACTTTGAGGAAAAGCCTTTTGTGTGTGGTTTTCCTGATTGTGGCATGAGATTTGCTTACAAACATGTGCGAGATAATCACGAAAAAACTGCTAAACATGTTTTTACCCTAGGAGATTTTGAAGAAGCCGATGAAGACTTCAGGTCAAGGCCGAGGGGAGGAAGAAAGAGAAAATGTCCTACTGTTGAAATCTTAATTAGGAAGAGGGTTACTCCACCTGCTCAGTTGGAGAATTGGTTATTTATGCAGGATAGTGACTAGTGAGTAGAGTGCATTGAGCATGATATATTATATAATATAATAGGATCTAGGACAACATATAGTAACCGTGGAACCAATTTGCAATTATAACACAAGCAACTTCAACAAAGTTACAATTGTTTATAGAGGAGTGTCACTCTTTCATAACCCGTCTTTTTTTAAGTTCTTCCTGTAATTCTTCTTATAATTAACTAGAATTTATTGTTTCTATTTATATGATTGAATCGAGCGAGAAAAAATAAAAGGAATGAAACACATTGGAA 1181 0.3903 MCLNLMDQYQVGRPPVKLHQGCLCHALFYFERPFVCSLHDCQASYRRKDHLTRHLLQHQGKTFKCPIGDCNIYFSLQSNMKRHVEEIHNGSSSSTIDKSHKEHVCPEMGCGKVFRYASQLQKHEDSHVKLESIDVVCLEPGCLKHFANVQCLQAHVKSFHQYITCDICGSKQLKKNIKRHFRSHEADSSSSPETFQCEFKGCSCTFSRKSNLDKHKKAVHFEEKPFVCGFPDCGMRFAYKHVRDNHEKTAKHVFTLGDFEEADEDFRSRPRGGRKRKCPTVEILIRKRVTPPAQLENWLFMQDSD 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00411 305 ProSitePatterns Zinc finger C2H2 type domain signature. 105 127 IPR013087 -
Pste8g00411 305 SUPERFAMILY beta-beta-alpha zinc fingers 175 230 IPR036236 -
Pste8g00411 305 SUPERFAMILY beta-beta-alpha zinc fingers 31 60 IPR036236 -
Pste8g00411 305 ProSitePatterns Zinc finger C2H2 type domain signature. 197 220 IPR013087 -
Pste8g00411 305 ProSitePatterns Zinc finger C2H2 type domain signature. 228 252 IPR013087 -
Pste8g00411 305 Gene3D Classic Zinc Finger 196 223 - -
Pste8g00411 305 Gene3D Classic Zinc Finger 30 58 - -
Pste8g00411 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 63 93 IPR013087 -
Pste8g00411 305 SUPERFAMILY beta-beta-alpha zinc fingers 100 128 IPR036236 -
Pste8g00411 305 Gene3D Classic Zinc Finger 59 100 - -
Pste8g00411 305 ProSitePatterns Zinc finger C2H2 type domain signature. 65 88 IPR013087 -
Pste8g00411 305 SMART c2h2final6 63 88 IPR013087 -
Pste8g00411 305 SMART c2h2final6 195 220 IPR013087 -
Pste8g00411 305 SMART c2h2final6 103 127 IPR013087 -
Pste8g00411 305 SMART c2h2final6 135 160 IPR013087 -
Pste8g00411 305 SMART c2h2final6 226 252 IPR013087 -
Pste8g00411 305 SMART c2h2final6 163 184 IPR013087 -
Pste8g00411 305 SMART c2h2final6 34 58 IPR013087 -
Pste8g00411 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 132 IPR013087 -
Pste8g00411 305 ProSitePatterns Zinc finger C2H2 type domain signature. 36 58 IPR013087 -
Pste8g00411 305 Gene3D Classic Zinc Finger 224 249 - -
Pste8g00411 305 SUPERFAMILY beta-beta-alpha zinc fingers 61 89 IPR036236 -
Pste8g00411 305 PANTHER ZINC FINGER PROTEIN 17 293 - -
Pste8g00411 305 Pfam Zinc finger, C2H2 type 63 88 IPR013087 -
Pste8g00411 305 Pfam Zinc finger, C2H2 type 195 220 IPR013087 -
Pste8g00411 305 Pfam Zinc finger, C2H2 type 103 127 IPR013087 -
Pste8g00411 305 Pfam Zinc finger, C2H2 type 34 58 IPR013087 -
Pste8g00411 305 Gene3D Classic Zinc Finger 101 187 - -
Pste8g00411 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 195 225 IPR013087 -
Pste8g00411 305 ProSiteProfiles Zinc finger C2H2 type domain profile. 34 63 IPR013087 -
Pste8g00411 305 ProSitePatterns Zinc finger C2H2 type domain signature. 137 160 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00411 Pste-Chr8 2136807 2138384 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00411 25 255 C2H2 Transcription Factor Family AT1G72050 44.094 2.22e-67 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pste8g00411 zf-C2H2 0.012 CL0361