Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste8g00339 CAAATTTTCACATAGCCTCTTATTCTTCTTCTTATTATTATTATTATTTTTTAATTTTTATTTTTATTTTATTATTATTATTGTTATTATTATTATAATTAGTTTTTGTTTTCATCACCCACCATTCATCTTTGGATGGTGAATTTCCCATCTGGGTTGCTTTTGCTTCTCTGATCTCTTCACCTTCTCTTCTCCCAATTCCTTCTCTGATCCCAGCAACCCAAAAAAACAAAAAAAAAATCATAAAAAAAAAATTGAAAAAATATAGCTACTTGGCTTCTCCCTTTGGTGGATTAGATATTTTGCTTCAGTTTTTTATTGATGCTCCAAAGATCCGATTCTATTAGATCGAATTTTGGCAAAACCCACTTCGTATCTGATTGAAGCACCTACTGGGTTCTGTCCGAGATTCAAGATAAGATGGAATCGGATCTTGGCAAGCTCTTCATTGGGGGAATTTCCTGGGACACCGATGAGGAACGTCTCAAAGAATATTTTGGGAAATATGGAGAGGTGATAGAGGCTGTGATCATGAGAGATCGCACCACAGGTCGTGCTCGCGGTTTTGGTTTCGTTGTCTTTGCCGATCCTGCTGTTGCAGAAAGAGTCATTATGGATAAGCATATCATTGATGGCCGCACAGTTGAAGCTAAGAAAGCTGTTCCTAGGGATGATCAGCTTACTGTAAACAGACAGTCTGGTGGCATTAATGGATCTCCGGCTCCTGGACGCACCAAAAAGATTTTTGTTGGAGGTTTACCATCAACAATCACTGAAAGTGATTTCAAGAAGTACTTTGATCAGTTTGGTATGATTACTGATGTTGTAGTAATGTATGATCATAATACACAGAGGCCACGTGGTTTTGGCTTCATCACTTATGATTCAGAAGAAGCTGTGGATAGAGTTCTTTACAAAACATTTCATGAACTTAATGGAAAGATGGTTGAGGTCAAGAGGGCAGTTCCTAAAGAGCTTTCCCCTGGACCTACCCGGAGCCCATTGGTAGGATATAACTATGGTTTGAATAGGACCAGTAGCTTCTTAAATAGTTATGCTCAGGGTTTCAATATGAATCCAATTGGAGGTTTTGGAGTCAGGATGGATGGAAGGTTTAGTCCACTTACTAGTGCTAGAAGTGGGTTTACTCCCTTTGGCTCCAGTGGTTATGGAATGGGAATGAATTTAGATTCTGGATTGAACCCAAGCTATGGAGGGAATTCAAGTTATGGTGGCAGTCTTGGATATGGTCGGATGAGTCCTTTGTACAATGGCAACTCAAACAGATATACCACTCCTATTGGCAATAGTGGGAGCAATGGGAGAAGTGATTCCCTAATGAACTCAGCTTCTCGAAATGTTTGGGGAAATGGGGGCCTAAATAATGCTGCCAATAATCCAGTCAGCCCTGGAGCTTTCTTGGGATCTGGAAGTGGGGCTTTTGGTGTTTCAATTGGAAATAGTGCCACAAATTGGGCTCCGTCAGTTCCAACACAGGGTGGAGGGATTGCTTCTGCGTATAGTACTTGGGGTAACACTTATGAAAGTGGAGATAACAACATTGGTTTAGGAGGTGGAGGGTATGGAAGGAACAGCAACCCAAGTGTGCCTCAATCTTCAACATTTACTGCACCAACTGGTGGTTATGAAGGATCCTATGGGGACTTGTACCGCAGTGATTCAGTTTACAGTGACTCAACTTGGCGGTCTGCTGCTTCTGAGATAGATACTTCCGCTTTGTTTGGTTATGCACTTGGTGGTATAGCTTCAGATGATCCAATAAAGAGTTCTGAGGGATTTATTGGAAACTACAATGTAACAACTAGACAGTCTAATAGAGGAATTGCTGCTTAGGAGATATGTAAATTGGATATGTTATGGTAACTAGATTAAAGGAAACTGGTTAAAGAAAATGAGGTATTGTGAAATCATACATCTCCATCACTTAAGAGATATCAGCTCATAAAGAAATTCATAATATATAGCCTAACGGTGTTCTTTCATTTGAAGTATACAGAAGCTAAATCAATCACAAGGGTTTTGTGTAAGGTTTGGGATTTTTGTTTTGTCTTTATTTTTCAAGGCTAGGTTCCTTTCTTGGAATTTGATTGAGGTGTAAAATCAGATTGCGGGATATACTAAGGAAGATTGCAGGATATACTCAGGAAGATTGGTTTCAGTAGTCTAATAGTGCATTGCTGGAGAGATGCACCATCGTTAGCATGCTTAATGGTAGTTTATTAATTTTTGAATTTTTTTTGCCATTGTAATGCTTGGCAAGCTGTTTGTTGTGTCACCATCTTTTTTATGGGACATGTTTCTGATCAAATTGTAAGTGAAGTTCAGTTTGATTTATCAGGTTTGAAAAATTAGAGGGGTACCCATCTTGGATCCCCCATCAAATAATTAGTTACTGGACAGATATTAGTTCTTGTTAGACTTTTGTTGTACAACTTCATACTTGGTTTATTGTTACAGTTGAAATCTGGTTCCTATTGATATTACCAGTTACCTCTATTCATTATAGTTGCC 2532 0.3878 MESDLGKLFIGGISWDTDEERLKEYFGKYGEVIEAVIMRDRTTGRARGFGFVVFADPAVAERVIMDKHIIDGRTVEAKKAVPRDDQLTVNRQSGGINGSPAPGRTKKIFVGGLPSTITESDFKKYFDQFGMITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNGKMVEVKRAVPKELSPGPTRSPLVGYNYGLNRTSSFLNSYAQGFNMNPIGGFGVRMDGRFSPLTSARSGFTPFGSSGYGMGMNLDSGLNPSYGGNSSYGGSLGYGRMSPLYNGNSNRYTTPIGNSGSNGRSDSLMNSASRNVWGNGGLNNAANNPVSPGAFLGSGSGAFGVSIGNSATNWAPSVPTQGGGIASAYSTWGNTYESGDNNIGLGGGGYGRNSNPSVPQSSTFTAPTGGYEGSYGDLYRSDSVYSDSTWRSAASEIDTSALFGYALGGIASDDPIKSSEGFIGNYNVTTRQSNRGIAA 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste8g00339 477 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Pste8g00339 477 SMART rrm1_1 107 179 IPR000504 GO:0003723
Pste8g00339 477 SMART rrm1_1 7 78 IPR000504 GO:0003723
Pste8g00339 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Pste8g00339 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Pste8g00339 477 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 166 IPR000504 GO:0003723
Pste8g00339 477 SUPERFAMILY RNA-binding domain, RBD 4 103 IPR035979 GO:0003676
Pste8g00339 477 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 473 - -
Pste8g00339 477 CDD RRM2_Hrp1p 107 184 - -
Pste8g00339 477 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Pste8g00339 477 Gene3D - 105 185 IPR012677 -
Pste8g00339 477 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Pste8g00339 477 Gene3D - 6 87 IPR012677 -
Pste8g00339 477 MobiDBLite consensus disorder prediction 288 310 - -
Pste8g00339 477 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Pste8g00339 477 SUPERFAMILY RNA-binding domain, RBD 105 193 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste8g00339 Pste-Chr8 1825232 1829688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste8g00339 5 180 Eukaryotic Initiation Factors Gene Family AT2G23350 21.910 1.78e-08 55.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste8g00339 8 1825232 1829688 Pste8g00339 8 1825232 1829688 ECH
Pste7g01391 7 12630935 12635202 Pste8g00339 8 1825232 1829688 PCT